Therapeutically Applicable Research to Generate Effective Treatments (TARGET)

Tools & Applications

• Broad Institute FireCloud by The Broad Institute of MIT & Harvard
  
• Cancer Genomics Cloud by Seven Bridges
  
• GDC Legacy Archive by National Cancer Institute
  
• Genomic Data Commons by National Cancer Institute
  
• ISB Cancer Genomics Cloud by Institute for Systems Biology
  
• TARGET data matrix by National Cancer Institute
  

Publications

• A Children's Oncology Group and TARGET initiative exploring the genetic landscape of Wilms tumor by Gadd S, Huff V, Walz AL, et al.
  
• Ancestry and pharmacogenomics of relapse in acute lymphoblastic leukemia by Yang JJ, Cheng C, Devidas M, et al.
  
• Biomarker significance of plasma and tumor miR-21, miR-221, and miR-106a in osteosarcoma by Nakka M, Allen-Rhoades W, Li Y, et al.
  
• CSF3R mutations have a high degree of overlap with CEBPA mutations in pediatric AM by Maxson JE, Ries RE, Wang YC, et al.
  
• Genetic predisposition to neuroblastoma mediated by a LMO1 super-enhancer polymorphism by Oldridge DA, Wood AC, Weichert-Leahey N, Crimmins I, Sussman R, Winter C, McDaniel LD, Diamond M, Hart LS, Zhu S, Durbin AD, Abraham BJ, et al.
  
• Genome-Wide Profiles of Extra-cranial Malignant Rhabdoid Tumors Reveal Heterogeneity and Dysregulated Developmental Pathways by Chun HJ, Lim EL, Heravi-Moussavi A, et al.
  
• Genomic classification and identification of the cell of origin of pediatric mixed phenotype acute leukemia by Thomas B. Alexander, Zhaohui Gu, Ilaria Iacobucci, et al.
  
• Genomics in childhood acute myeloid leukemia comes of age by Brunner AM, Graubert TA.
  
• Identification and analyses of extra-cranial and cranial rhabdoid tumor molecular subgroups reveal tumors with cytotoxic T cell infiltration by Hye-Jung E. Chun, Pascal D. Johann, Katy Milne et al.
  
• MicroRNA Expression-Based Model Indicates Event-Free Survival in Pediatric Acute Myeloid Leukemia by Lim EL, Trinh DL, Ries RE, et al.
  
• MLLT1 YEATS domain mutations in clinically distinctive Favourable Histology Wilms tumours by Perlman EJ, Gadd S, Arold ST, et al.
  
• Recurrent DGCR8, DROSHA, and SIX homeodomain mutations in favorable histology Wilms tumors by Walz AL, Ooms A, Gadd S, et al.
  
• Relapsed neuroblastomas show frequent RAS-MAPK pathway mutations by Eleveld TF, Oldridge DA, Bernard V, Koster J, et al.
  
• Significance of TP53 Mutation in Wilms Tumors with Diffuse Anaplasia: A Report from the Children's Oncology Group by Ooms AH, Gadd S, Gerhard DS, et al.
  
• TCF21 hypermethylation in genetically quiescent clear cell sarcoma of the kidney by Gooskens SL, Gadd S, Guidry Auvil JM, et al.
  
• The genetic landscape of high-risk neuroblastoma by Pugh TJ, Morozova O, Attiyeh EF, Asgharzadeh S, Wei JS, Auclair D, Carter SL, Cibulskis K, Hanna M, Kiezun A, Kim J, Lawrence MS, Lichenstein L, et al.
  
• The genomic landscape of pediatric and young adult T-lineage acute lymphoblastic leukemia by Yu Liu, John Easton, Ying Shao, et al.
  
• The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions by Bolouri H, Farrar JE, Triche T Jr, et al.
  

Sentinel-2

Tutorials

• Exploring the Chile wildfires with Landsat and Sentinel-2 imagery by Timothy Whitehead
  
• Integrate imagery from the Sentinel-2 archive into your own apps, maps, and analysis with the Sentinel-2 image service by Esri
  
• Learning Custom Scripts to Make Useful and Beautiful Satellite Images by Monja Šebela
  
• Tutorial for using Sentinel-2 data by Antti Lipponen
  
• Using Vector tiles and AWS Lambda, we can build a really simple API to get Landsat and Sentinel images by Remote Pixel
  

Tools & Applications

• EO Browser by Sinergise
  
• EOS Land Viewer by Earth Observing System
  
• FME Landsat-8/Sentinel-2 File Selector by Safe Software
  
• Interactive map with AI detected fields and crops based on Sentinel-2 imagery by OneSoil
  
• Python package for working with Sentinel-2 AWS data by Sinergise
  
• QGIS plugin for Sentinel-2 data by Sinergise
  
• Satellite Search by Remote Pixel by Remote Pixel
  
• Sentinel Hub WMS/WMTS/WCS Service by Sinergise
  
• Sentinel Playground by Sinergise
  
• Sentinel-2 Cloudless Atlas by EOX
  
• Spectator - tracking Sentinel 2, accessing the data and quick preview by Spectator
  
• Sterling Geo Using Sentinel-2 on Amazon Web Services to Create NDVI by Sterling Geo
  
• Use the Sentinel Explorer app to explore, visualize, and analyze the entire Sentinel-2 archive by Esri
  

Landsat 8

Tutorials

• A Gentle Introduction to GDAL Part 4: Working with Satellite Data by Planet
  
• Exploring the Chile wildfires with Landsat and Sentinel-2 imagery by Timothy Whitehead
  
• Integrate imagery from the full Landsat archive into your own apps, maps, and analysis with Landsat image services by Esri
  
• Using Cloud-Optimized GeoTIFF by acgeospatial
  
• Using Vector tiles and AWS Lambda, we can build a really simple API to get Landsat and Sentinel images by Remote Pixel
  

Tools & Applications

• Aggi: the fire detecting Twitter bot by Aggi
  
• Apps for exploring and analyzing Landsat imagery on the fly by Esri
  
• COG-Explorer - View Cloud Optimized GeoTIFF images in the browser directly from object storage by EOX
  
• Development Seed Geolambda by Matthew Hanson
  
• EOS Land Viewer by Earth Observing System
  
• FME Landsat-8 on AWS Reader by Safe Software
  
• FME Landsat-8/Sentinel-2 File Selector by Safe Software
  
• landsatlive.live by Development Seed
  
• Sentinel Hub WMS/WMTS/WCS Service for Landsat by Sinergise
  
• Sentinel Playground for Landsat by Sinergise
  
• Spectator - tracking Landsat 8, accessing the data and quick preview by Spectator
  

Common Crawl

Tutorials

• Large-scale graph mining with Spark by Win Suen
  
• Learning word vectors for 157 languages by Facebook AI Research
  

Tools & Applications

• Dresden Web Table Corpus (DWTC) by Database Systems Group Dresden
  
• Index to WARC Files and URLs in Columnar Format by Sebastian Nagel
  

Publications

• Building a Web-Scale Dependency-Parsed Corpus from CommonCrawl by Alexander Panchenko, et al.
  
• C4Corpus: Multilingual Web-Size Corpus with Free License by Ivan Habernal, Omnia Zayed, Iryna Gurevych
  
• Large-scale analysis of style injection by relative path overwrite by Sajjad Arshad, et al.
  
• N-gram counts and language models from the Common Crawl by Christian Buck, Kenneth Heafield, Bas van Ooyen
  
• Of using Common Crawl to play Family Feud by Paul Masurel
  
• Using open data to predict market movements by DELL EMC
  
• Web Data Commons - RDFa, microdata, and microformat data sets by Christian Bizer, Robert Meusel, Anna Primpeli
  

NEXRAD on AWS

Tutorials

• Mapping Noaa Nexrad Radar Data With CARTO by Stuart Lynn
  
• NEXRAD on EC2 tutorial by openradar
  
• Using Python to Access NCEI Archived NEXRAD Level 2 Data (Jupyter notebook) by Ryan May
  

Tools & Applications

• nexradaws on pypi.python.org - python module to query and download Nexrad data from Amazon S3 by Aaron Anderson
  
• WeatherPipe - Amazon EMR based analysis tool for NEXRAD data stored on Amazon S3 by Stephen Lien Harrell
  

Publications

• Declines in an abundant aquatic insect, the burrowing mayfly, across major North American waterways by Phillip M. Stepanian, Sally A. Entrekin, Charlotte E. Wainwright, Djordje Mirkovic, Jennifer L. Tank, & Jeffrey F. Kelly
  
• Level 2 Interface Control Document for Message Data Formats: Build 18 by NOAA ROC
  
• Level 2 Interface Control Document for Transfer: Build 18 by NOAA ROC
  
• Level 3 Interface Control Document for Message Data Formats: Build 18 by NOAA ROC
  
• Seasonal abundance and survival of North America’s migratory avifauna determined by weather radar by Adriaan M. Dokter, Andrew Farnsworth, Daniel Fink, Viviana Ruiz-Gutierrez, Wesley M. Hochachka, Frank A. La Sorte, Orin J. Robinson, Kenneth V. Rosenberg & Steve Kelling
  
• Unlocking the Potential of NEXRAD Data through NOAA’s Big Data Partnership by Steve Ansari and Stephen Del Greco
  

CBERS on AWS

Tutorials

• Keeping a SpatioTemporal Asset Catalog (STAC) Up To Date with SNS/SQS by Frederico Liporace
  

Tools & Applications

• aws-sat-api-py by Remote Pixel
  
• CBERS static STAC catalog served by stac-browser by Radiant Earth
  
• CBERS timelapse GIF generator by Frederico Liporace
  
• cbers-tiler by Mapbox
  
• EOS Land Viewer by Earth Observing System
  
• Remote Pixel Viewer by Remote Pixel
  
• rio-tiler by Mapbox
  
• STAC V0.7 search endpoint for archive by AMS Kepler
  

IRS 990 Filings

Tutorials

• Tutorial on using the IRS 990 e-file dataset by 990 Consulting, LLC
  

Tools & Applications

• 990_long by Charity Navigator
  
• aws-irs-990-explorer by Chris Herbert
  
• Grantmakers.io by Chad Kruse
  
• Guide to Open Data for Nonprofit Research by lecy
  
• Non Profit Light by Non Profit Light
  
• Nonprofit Explorer by ProPublica
  
• Open990 by 990 Consulting, LLC
  
• Parse 990 XML using IRSx by Jacob Fenton
  

Multi-Scale Ultra High Resolution (MUR) Sea Surface Temperature (SST)

Tutorials

• Python Jupyter Notebooks by Chelle Gentemann, Rich Signell
  
• Python Reader Software by PO.DAAC
  

Tools & Applications

• HTTPS server by PO.DAAC
  
• OPeNDAP server by Physical Oceanography Distributed Active Archive Center (PO.DAAC)
  
• State of the Ocean (SOTO) server by PO.DAAC
  
• THREDDS server by PO.DAAC
  
• Web discovery service by PO.DAAC
  

Publications

• A multi-scale high-resolution analysis of global sea surface temperature by Chin, Toshio Michael, Jorge Vazquez-Cuervo, and Edward M. Armstrong
  
• GHRSST Data Processing Specification by GHRSST Project
  

Terrain Tiles

Tools & Applications

• EOS Land Viewer by Earth Observing System
  
• Mapzen Terrain Tiles on AWS Reader by Safe Software
  
• On The Go Map by On The Go Map
  
• Open-Source Elevation Service by Racemap
  
• PlanetUtils (GitHub): Scripts and a Docker container to download, merge, and resample terrain tiles by Interline Technologies
  
• PODPAC: Python Library supporting TerrainTiles for analysis by Creare
  
• R package for accessing Terrain Tiles by Jeffrey W. Hollister
  
• Sentinel Hub WMS/WMTS/WCS Service for DEM by Sinergise
  
• Sentinel Playground for DEM by Sinergise
  

Cancer Cell Line Encyclopedia (CCLE)

Tools & Applications

• Broad Institute Cancer Cell Line Encyclopedia by The Broad Institute of MIT & Harvard
  
• Cancer Genomics Cloud by Seven Bridges
  
• Genomic Data Commons by National Cancer Institute
  
• ISB CGC BigQuery tables by Institute for Systems Biology
  

Publications

• Next-generation characterization of the Cancer Cell Line Encyclopedia by Ghandi, M., Huang F. et al.
  
• Pharmacogenomic agreement between two cancer cell line data sets by The Cancer Cell Line Encyclopedia Consortium & The Genomics of Drug Sensitivity in Cancer Consortium
  
• The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity by Barretina Caponigro Stransky et al.
  
• The landscape of cancer cell line metabolism by Li, H. et al.
  

NOAA Water-Column Sonar Data Archive

Tutorials

• Frequency Differencing with Raw Data by Carrie Wall
  
• Plotting Raw EK60 Data by Carrie Wall
  
• Reading and Plotting Bottom Data by Carrie Wall
  
• Reading and Plotting Processed CSV Data by Carrie Wall
  

Tools & Applications

• pyEcholab - an open-source, python-based toolkit for reading, processing, plotting, and exporting fisheries acoustic echosounder data by Rick Towler, Chuck Anderson, Veronica Martinez, Pamme Crandell
  
• Water Column Sonar Data Explorer - Map viewer for exploring sonar water column data by NCEI, NOAA
  

Publications

• Building an Accessible Archive for Water Column Sonar Data by Carrie Wall
  
• Increasing the accessibility of acoustic data through global access and imagery by Carrie Wall, Michael Jech, and Susan McLean
  

eBird Status and Trends Model Results

Tutorials

• eBird Status and Trends FAQ by Cornell Lab of Ornithology
  
• eBird Status and Trends Visualizations by Cornell Lab of Ornithology
  
• ebirdst - Background, Data Access and Data Structure by Tom Auer and Daniel Fink
  
• ebirdst - Generating Seasonal Abundance and Range Maps and Stats by Matt Strimas-Mackey, Tom Auer, and Daniel Fink
  
• ebirdst - Intro Mapping by Tom Auer and Daniel Fink
  
• ebirdst - Non-raster Data by Tom Auer and Daniel Fink
  

Tools & Applications

• ebirdst R Package by Cornell Lab of Ornithology
  

Publications

• Modeling avian full annual cycle distribution and population trends with citizen science data by Fink et al (2019)
  

Allen Cell Imaging Collections

Tutorials

• Download and train label-free models by Greg Johnson
  
• Integrating single-cell sequencing and nuclear imaging data by Chengxiang Qiu and William Noble
  

Tools & Applications

• AICS Volume Viewer by Dan Toloudis
  
• AICSImageIO by Matthew Bowden, Jackson Brown, Jamie Sherman, Dan Toloudis
  
• Allen Cell Feature Explorer by Allen Institute for Cell Science
  
• Allen Cell Structure Segmenter by Jianxu Chen, Liya Ding, Matheus P. Viana, Melissa C. Hendershott, Ruian Yang, Irina A. Mueller, Susanne M. Rafelski
  
• Integrated Mitotic Stem Cell by Allen Institute for Cell Science
  
• Pytorch 3D Integrated Cell by Gregory R. Johnson, Rory M. Donovan-Maiye, Mary M. Maleckar
  
• Visual Guide to Human Cells by Allen Institute for Cell Science
  

Publications

• Label-free prediction of three-dimensional fluorescence images from transmitted-light microscopy by Chawin Ounkomol, Sharmishtaa Seshamani, Mary M. Maleckar, Forrest Collman & Gregory R. Johnson
  

Clinical Proteomic Tumor Analysis Consortium 2 (CPTAC-2)

Tools & Applications

• Cancer Genomics Cloud by Seven Bridges
  
• CPTAC Data Portal by National Cancer Institute
  
• Genomic Data Commons by National Cancer Institute
  
• Proteomic Data Commons by National Cancer Institute
  

Publications

• Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer by Hui Zhang, Tao Liu, Zhen Zhang, Samuel H. Payne, Bai Zhang, Jason E. McDermott, Jian-Ying Zhou, Vladislav A. Petyuk, Li Chen, Debjit Ray, Shisheng Sun, Feng Yang, Lijun Chen, Jing Wang, Punit Shah, Seong Won Cha, Paul Aiyetan, Sunghee Woo, Yuan Tian, Marina A. Gritsenko, Therese R. Clauss, Caitlin Choi, Matthew E. Monroe, Stefani Thomas, Song Nie, Chaochao Wu, Ronald J. Moore, Kun-Hsing Yu, David L. Tabb, David Fenyö, Vineet Bafna, Yue Wang, Henry Rodriguez, Emily S. Boja, Tara Hiltke, Robert C. Rivers, Lori Sokoll, Heng Zhu, Ie-Ming Shih, Leslie Cope, Akhilesh Pandey, Bing Zhang, Michael P. Snyder, Douglas A. Levine, Richard D. Smith, Daniel W. Chan, Karin D. Rodland, the CPTAC Investigators
  
• Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities by Suhas Vasaikar, Chen Huang, Xiaojing Wang. Vladislav A. Petyuk, Sara R. Savage, Bo Wen, Yongchao Dou, Yun Zhang, Zhiao Shi, Osama A. Arshad, Marina A. Gritsenko, Lisa J. Zimmerman, Jason E. McDermott, Therese R. Clauss, Ronald J. Moore, Rui Zhao, Matthew E. Monroe, Yi-Ting Wang, Matthew C. Chambers, Robbert J.C. Slebos, Ken S. Lau, Qianxing Mo, Li Ding, Matthew Ellis, Mathangi Thiagarajan, Christopher R. Kinsinger, Henry Rodriguez, Richard D. Smith, Karin D. Rodland, Daniel C. Liebler, Tao Liu, Bing Zhang, Clinical Proteomic Tumor Analysis Consortium
  
• Proteomic analysis of colon and rectal carcinoma using standard and customized databases by Slebos RJ, Wang X, Wang X, Zhang B, Tabb DL, Liebler DC
  

Fly Brain Anatomy: FlyLight Gen1 and Split-GAL4 Imagery

Tutorials

• File Operations on AWS S3 by Rob Svirskas
  
• Using Imagery on AWS S3 by Rob Svirskas
  

Tools & Applications

• Color Depth Search Fiji Plugin by Hideo Otsuna
  
• Fly Light Split-GAL4 Driver Collection by Rob Svirskas
  
• FlyLight Project Website by Geoffrey Meissner
  
• NeuronBridge by Jody Clements, Rob Svirskas, Hideo Otsuna, Cristian Goina, Konrad Rokicki
  

Publications

• A GAL4-Driver Line Resource for Drosophila Neurobiology by Jenett, A., Rubin, G. M., Ngo, T., Shepherd, D., Murphy, C., Dionne, H., Pfeiffer, B. D., Cavallaro, A., Hall, D., Jeter, J., Iyer, N., Fetter, D., Hausenfluck, J. H., Peng, H., Trautman, E. T., Svirskas, R. R., Myers, E. W., Iwinski, Z. R., Aso, Y., DePasquale, G. M., Enos, A., Hulamm, P., Lam, S. C. B., Li, H., Laverty, T. R., Long, F., Qu, L., Murphy, S. D., Rokicki, K., Safford, T., Shaw, K., Simpson, J. H., Sowell, A., Tae, S., Yu, Y., & Zugates, C. T.
  
• An unbiased template of the Drosophila brain and ventral nerve cord by Bogovic, J.A., Otsuna, H., Heinrich, L., Ito, M., Jeter, J., Meissner, G., Nern, A., Colonell, J., Malkesman, O., Ito, K., & Saalfeld, S.
  
• Color depth MIP mask search: a new tool to expedite Split-GAL4 creation by Otsuna, H., Ito, M., & Kawase, T.
  
• The neuronal architecture of the mushroom body provides a logic for associative learning by Aso, Y., Hattori, D., Yu, Y., Johnston, R. M., Iyer, N. A., Ngo, T., Dionne, H., Abbott, L., Axel, R., Tanimoto, H., & Rubin, G. M.
  

ICGC on AWS

Tutorials

• AWS Pancancer Workflow Launcher by Solomon Shorser
  

Publications

• Analyses of non-coding somatic drivers in 2,693 cancer whole genomes by Rheinbay et al (2020)
  
• Genomic basis of RNA alterations in cancer by PCAWG Transcriptome Core Group et al. (2020)
  
• Pan-cancer analysis of whole genomes by The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium (2020)
  
• Patterns of somatic structural variation in human cancer genomes by Li et al. (2020)
  
• The evolutionary history of 2,658 cancers by Gerstung et al (2020)
  
• The repertoire of mutational signatures in human cancer by Alexandrov et al (2020)
  

SpaceNet

Tutorials

• Getting Started with SpaceNet Data by Adam Van Etten
  

Tools & Applications

• Solaris: an open source Python library for analyzing overhead imagery with machine learning by Nick Weir
  

Publications

• 2nd SpaceNet Competition Winners Code Release by David Lindenbaum
  
• Building Extraction with YOLT2 and SpaceNet Data by Adam Van Etten
  
• Introducing the SpaceNet Road Detection and Routing Challenge and Dataset by David Lindenbaum
  
• Solving SpaceNet Road Detection Challenge With Deep Learning by Jonathan Howe, May Casterline and Abel Brown
  
• SpaceNet: Winning Implementations and New Imagery Release by Todd Stavish
  

Clinical Proteomic Tumor Analysis Consortium 3 (CPTAC-3)

Tools & Applications

• Cancer Genomics Cloud by Seven Bridges
  
• CPTAC Data Portal by National Cancer Institute
  
• Genomic Data Commons by National Cancer Institute
  
• Proteomic Data Commons by National Cancer Institute
  

Publications

• Evaluation of NCI-7 Cell Line Panel as a Reference Material for Clinical Proteomics by Clark DJ, Hu Y, Bocik W, Chen L, Schnaubelt M, Roberts R, Shah P, Whiteley G, Zhang H
  
• Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma by Clark DJ, Dhanasekaran SM, Petralia F, Pan J, Song X, Hu Y, da Veiga Leprevost F, Reva B, Lih TM, Chang HY, Ma W, Huang C, Ricketts CJ, Chen L1, Krek A, Li Y, Rykunov D, Li QK, Chen LS, Ozbek U, Vasaikar S, Wu Y, Yoo S, Chowdhury S, Wyczalkowski MA, Ji J, Schnaubelt M, Kong A, Sethuraman S, Avtonomov DM, Ao M, Colaprico A, Cao S, Cho KC, Kalayci S, Ma S, Liu W, Ruggles K, Calinawan A, Gümüş ZH, Geizler D, Kawaler E, Teo GC, Wen B, Zhang Y, Keegan S, Li K, Chen F, Edwards N, Pierorazio PM, Chen XS, Pavlovich CP, Hakimi AA, Brominski G, Hsieh JJ, Antczak A, Omelchenko T, Lubinski J, Wiznerowicz M, Linehan WM, Kinsinger CR, Thiagarajan M, Boja ES, Mesri M, Hiltke T, Robles AI, Rodriguez H, Qian J, Fenyö D, Zhang B, Ding L, Schadt E, Chinnaiyan AM, Zhang Z, Omenn GS, Cieslik M, Chan DW, Nesvizhskii AI, Wang P, Zhang H; Clinical Proteomic Tumor Analysis Consortium
  

Global Database of Events, Language and Tone (GDELT)

Tutorials

• Analysing Brexit Coverage In The Media Over Time by Mark Chopping
  
• Bootstrapping GeoMesa HBase on AWS S3 by Commonwealth Computer Research, Inc.
  
• Creating PySpark DataFrame from CSV in AWS S3 in EMR by Jake Chen
  
• Exploring GDELT with Athena by Julien Simon
  
• Running R on Amazon Athena by Gopal Wunnava
  

Tools & Applications

• Globe Events by thermobook
  

Open NeuroData

Tutorials

• Download by Benjamin Falk
  
• Visualization using Neuroglancer by Benjamin Falk
  

Tools & Applications

• CloudVolume by William Silversmith
  
• Igneous by William Silversmith
  
• Neuroglancer by Jeremy Maitin-Shepard
  

Publications

• A Community-Developed Open-Source Computational Ecosystem for Big Neuro Data by J. T. Vogelstein, E. Perlman, B. Falk, A. Baden, W. Gray Roncal, V. Chandrashekhar, F. Collman, S. Seshamani, J. L. Patsolic, K. Lillaney, M. Kazhdan, R. Hider, D. Pryor, J. Matelsky, T. Gion, P. Manavalan, B. Wester, M. Chevillet, E. T. Trautman, K. Khairy, E. Bridgeford, D. M. Kleissas, D. J. Tward, A. K. Crow, B. Hsueh, M. A. Wright, M. I. Miller, S. J. Smith, R. J. Vogelstein, K. Deisseroth, and R. Burns
  
• From cosmos to connectomes: The evolution of data-intensive science by R. Burns, J. T. Vogelstein, and A. S. Szalay
  
• The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience by R. Burns, W. G. Roncal, D. Kleissas, K. Lillaney, P. Manavalan, E. Perlman, D. R. Berger, D. D. Bock, K. Chung, L. Grosenick, N. Kasthuri, N. C. Weiler, K. Deisseroth, M. Kazhdan, J. Lichtman, R. C. Reid, S. J. Smith, A. S. Szalay, J. T. Vogelstein, and R. J. Vogelstein.
  
• To the Cloud! A Grassroots Proposal to Accelerate Brain Science Discovery by J. T. Vogelstein, B. Mensh, M. Häusser, N. Spruston, A. C. Evans, K. Kording, K. Amunts, C. Ebell, J. Muller, M. Telefont, S. Hill, S. P. Koushika, C. Calì, P. A. Valdés-Sosa, P. B. Littlewood, C. Koch, S. Saalfeld, A. Kepecs, H. Peng, Y. O. Halchenko, G. Kiar, M. M. Poo, J. B. Poline, M. P. Milham, A. P. Schaffer, R. Gidron, H. Okano, V. D. Calhoun, M. Chun, D. M. Kleissas, R. J. Vogelstein, E. Perlman, R. Burns, R. Huganir, and M. I. Miller
  

CoMMpass from the Multiple Myeloma Research Foundation

Tools & Applications

• Genomic Data Commons by National Cancer Institute
  

Publications

• "Identification of Initiating Trunk Mutations and Distinct Molecular Subtypes: An Interim Analysis of the Mmrf Commpass Study" by Jonathan J Keats, PhD, Gil Speyer, Legendre Christophe, Christofferson Austin, Kristi Stephenson, BS, Ahmet Kurdoglu, Megan Russell, Aldrich Jessica, Cuyugan Lori, Jonathan Adkins, Jackie McDonald, Adrienne Helland, Alex Blanski, Meghan Hodges, Dan Rohrer, Sundar Jagannath, MD, David Siegel, MD PhD, Ravi Vij, MD MBA, Gregory Orloff, MD, Todd Zimmerman, MD, Ruben Niesvizky, MD, Darla Liles, MD, Joseph W. Fay, Jeffrey L. Wolf, MD PhD, Robert M. Rifkin, Norma C Gutierrez, The MMRF CoMMpass Network, Jen Toups, Mary Derome, MS, Winnie Liang, PhD, Seunchan Kim, Daniel Auclair, PhD, Pamela G. Kidd, MD, Scott Jewell, PhD, John David Carpten, PhD, Sagar Lonial, MD
  
• "Interim Analysis Of The MMRF CoMMpass Trial: a Longitudinal Study In Multiple Myeloma Relating Clinical Outcomes To Genomic and Immunophenotypic Profiles" by Keats JJ, Craig DW, Liang W, Venkata Y, Kurdoglu A, Aldrich J, Auclair D, Allen K, Harrison B, Jewell S, Kidd PG, Correll M, Jagannath S, Siegel DS, Vij R, Orloff G, Zimmerman TM, MMRF CoMMpass Network, Capone W, Carpten J, Lonial S.
  
• "Interim Analysis of the Mmrf Commpass Trial: Identification of Novel Rearrangements Potentially Associated with Disease Initiation and Progression" by Sagar Lonial, MD, Venkata D Yellapantula, Winnie Liang, PhD, Ahmet Kurdoglu, BS, Jessica Aldrich, MSc, Christophe M. Legendre, MD, Kristi Stephenson, Jonathan Adkins, Jackie McDonald, Adrienne Helland, Megan Russell, Austin Christofferson, Lori Cuyugan, Dan Rohrer, Alex Blanski, Meghan Hodges, Mmrf CoMMpass Network, Mary Derome, Daniel Auclair, PhD, Pamela G. Kidd, MD, Scott Jewell, PhD, David Craig, PhD, John Carpten, PhD, Jonathan J. Keats, PhD
  
• "Molecular Predictors of Outcome and Drug Response in Multiple Myeloma: An Interim Analysis of the Mmrf CoMMpass Study" by Jonathan J Keats, PhD, Gil Speyer, Austin Christofferson, Christophe Legendre, PhD, Jessica Aldrich, Megan Russell, Lori Cuyugan, Jonathan Adkins, Alex Blanski, Meghan Hodges, Dan Rohrer, Sundar Jagannath, MD, Ravi Vij, MD, Gregory Orloff, MD, Todd Zimmerman, MD, Ruben Niesvizky, MD, Darla Liles, MD, Joseph W. Fay, Jeffrey L. Wolf, MD, Robert M Rifkin, Norma C Gutierrez, MD PhD, Mmrf CoMMpass Network, Jennifer Yesil, MS, Mary Derome, MS, Seungchan Kim, PhD, Winnie Liang, PhD, Pamela G. Kidd, MD, Scott Jewell, PhD, John David Carpten, PhD, Daniel Auclair, PhD, Sagar Lonial, MD FACP
  

NYU Langone & FAIR FastMRI Dataset

Tutorials

• FastMRI Tutorial (Jupyter Notebook) by Tullie Murrell
  

Publications

• Advancing machine learning for MR image reconstruction with an open competition:Overview of the 2019 fastMRI challenge by Knoll et al (2020)
  
• Assessment of the generalization of learned image reconstruction and the potential for transfer learning. by Knoll et al (2019)
  
• Deep Learning Methods for Parallel Magnetic Resonance Image Reconstruction by Knoll et al (2019)
  
• fastMRI:An Open Dataset and Benchmarks for Accelerated MRI by Zbontar et al (2019)
  

National Renewable Energy Laboratory's (NREL) PV Rooftop Database

Tools & Applications

• NSRDB Viewer by NREL
  

Publications

• Estimating rooftop solar technical potential across the US using a combination of GIS-based methods, lidar data, and statistical modeling by Pieter Gagnon et al 2018 Environ. Res. Lett. 13 024027
  
• Rooftop Solar Photovoltaic Technical Potential in the United States: A Detailed Assessment by Pieter Gagnon, Robert Margolis, Jennifer Melius, Caleb Phillips, and Ryan Elmore
  
• Rooftop Solar Technical Potential for Low-to-Moderate Income Households in the United States by Benjamin Sigrin and Meghan Mooney
  
• Using GIS-based methods and lidar data to estimate rooftop solar technical potential in US cities by Robert Margolis et al 2017 Environ. Res. Lett. 12 074013
  

Ozone Monitoring Instrument (OMI) / Aura NO2 Tropospheric Column Density

Tutorials

• Medium Post: COG Talk — Part 1: What’s new? by Vincent Sarago
  

Tools & Applications

• COG Application Programming Interface (API) by Development Seed
  
• COG metadata example  by Development Seed
  
• COG Viewer by Development Seed
  
• Rasterio (Python Library) for access to geospatial raster data by Mapbox
  

Prefeitura Municipal de São Paulo (PMSP) LiDAR Point Cloud

Tools & Applications

• Entwine by Hobu, Inc.
  
• Fusion by US Department of Agriculture - Forest Service
  
• LAStools by rapidlasso GmbH, GERMANY
  
• PDAL - Point Data Abstraction Library by PDAL Contributors
  

Publications

• Describing the Vertical Structure of Informal Settlements on the Basis of LiDAR Data – A Case Study for Favelas (Slums) in Sao Paulo City by S. C. L. Ribeiro, M. Jarzabek-Rychard, J. P. Cintra, H.-G. Maas
  

3000 Rice Genomes Project

Tools & Applications

• RiceGalaxy by International Rice Research Institute
  

Publications

• Rice Galaxy: an open resource for plant science by Juanillas V et al (2019)
  
• Structural variants in 3000 rice genomes by Fuentes RR et al (2019)
  
• Tracking the origin of two genetic components associated with transposable element bursts in domesticated rice by Chen J et al (2019)
  

Amazon Customer Reviews Dataset

Tutorials

• How to scale sentiment analysis using Amazon Comprehend, AWS Glue and Amazon Athena by Roy Hasson
  
• Implementing a recommender system with Amazon SageMaker and Apache MXNet Gluon by David Arpin
  
• Querying Review Data with Kognitio AWS Marketplace product using SQL by Mark Chopping
  
• Using S3 and Analytics with Amazon Reviews data by AWS
  

Community Earth System Model Large Ensemble (CESM LENS)

Tutorials

• Analyzing large climate model ensembles in the cloud by Joe Hamman, NCAR
  

Tools & Applications

• Jupyter Notebook and other documentation and tools for CESM LENS on AWS by NCAR Science at Scale team
  
• Rendered (static) version of Jupyter Notebook by Anderson Banihirwe, NCAR
  

Publications

• The Community Earth System Model (CESM) Large Ensemble Project: A Community Resource for Studying Climate Change in the Presence of Internal Climate Variability by Kay et al. (2015), Bull. AMS, 96, 1333-1349
  

Encyclopedia of DNA Elements (ENCODE)

Tutorials

• ENCODE CTCF ChIP-seq data correlation across different cell types by Paul Sud
  
• Exploring ENCODE data from EC2 with Jupyter notebook by Keenan Graham
  
• Ingesting ENCODE data into TileDB with S3 backend by Otto Jolanki
  

Publications

• New developments on the Encyclopedia of DNA Elements (ENCODE) data portal by Luo et al 2020
  

GOES on AWS

Tutorials

• Visualize GOES-16 in Python using Xarray by Hamed Alemohammad
  

Publications

• Billions of Birds Migrate. Where Do They Go? by National Geographic
  
• Embracing the cloud for climate research by North Carolina State University’s North Carolina Institute for Climate Studies
  
• Solar irradiance forecasting for the solar powered future by Solcast
  

NIH NCBI Sequence Research Archive (SRA) on AWS

Tutorials

• Access SRA data using Amazon Web Services (AWS) by NCBI SRA
  
• SRA in the Cloud by NCBI SRA
  

Tools & Applications

• SRA Toolkit by NCBI SRA
  

Publications

• The Sequence Read Archive by Leinonen et al (2011)
  

New York City Taxi and Limousine Commission (TLC) Trip Record Data

Tutorials

• Build a Real-time Stream Processing Pipeline with Apache Flink on AWS by Steffen Hausmann
  
• Deep Dive on Flink & Spark on Amazon EMR by Keith Steward
  
• Exploring data with Python and Amazon S3 Select by Manav Sehgal
  
• Optimizing data for analysis with Amazon Athena and AWS Glue by Manav Sehgal
  

OpenStreetMap on AWS

Tutorials

• Develop and Extract Value from Open Data by Daniel Bernao
  
• Querying OpenStreetMap with Amazon Athena by Seth Fitzsimmons
  

Tools & Applications

• OSM+Athena (GitHub) by Development Seed
  
• PlanetUtils (GitHub): Scripts and a Docker container to maintain your own OpenStreetMap planet by Interline Technologies
  

Sentinel-1

Tools & Applications

• EO Browser by Sinergise
  
• EOS Land Viewer by Earth Observing System
  
• Sentinel Hub WMS/WMTS/WCS Service by Sinergise by Sinergise
  
• Sentinel Playground by Sinergise
  

Sentinel-5P Level 2

Tutorials

• Accessing Sentinel-5P Data on S3 by MEEO by Meteorological Envionmental Earth Observation
  

Tools & Applications

• Catalogue of data set by Meteorological Envionmental Earth Observation
  
• The Atmospheric Toolbox by European Space Agency
  

Publications

• Sentinel-5P TROPOMI Document Library by European Space Agency
  

Beat Acute Myeloid Leukemia (AML) 1.0

Tools & Applications

• Genomic Data Commons by National Cancer Institute
  

Publications

• Clinical resistance to crenolanib in acute myeloid leukemia due to diverse molecular mechanisms by Haijiao Zhang, Samantha Savage, Anna Reister Schultz et al.
  
• Functional Genomic Landscape of Acute Myeloid Leukemia by Jeffrey W. Tyner, Cristina E. Tognon, Dan Bottomly et al.
  

COVID-19 Harmonized Data

Tutorials

• How Talend is joining the fight against COVID-19 by Thomas Bennett
  

Tools & Applications

• Stitch COVID-19 Integration by Jeff Huth
  
• Tap COVID-19 Python by Jeff Huth
  

Clinical Trial Sequencing Project - Diffuse Large B-Cell Lymphoma

Tools & Applications

• Genomic Data Commons by National Cancer Institute
  

Publications

• A multiprotein supercomplex controlling oncogenic signalling in lymphoma by Phelan JD, Young RM, Webster DE, Roulland S, Wright GW, Kasbekar M, Shaffer AL 3rd, Ceribelli M, Wang JQ, Schmitz R, Nakagawa M, Bachy E, Huang DW, Ji Y, Chen L, Yang Y, Zhao H, Yu X, Xu W, Palisoc MM, Valadez RR, Davies-Hill T, Wilson WH, Chan WC, Jaffe ES, Gascoyne RD, Campo E, Rosenwald A, Ott G, Delabie J, Rimsza LM, Rodriguez FJ, Estephan F, Holdhoff M, Kruhlak MJ, Hewitt SM, Thomas CJ, Pittaluga S, Oellerich T, Staudt LM
  
• Genetics and Pathogenesis of Diffuse Large B Cell Lymphoma by Roland Schmitz, Ph.D., George W. Wright, Ph.D., Da Wei Huang, M.D., Calvin A. Johnson, Ph.D., James D. Phelan, Ph.D., James Q. Wang, Ph.D., Sandrine Roulland, Ph.D., Monica Kasbekar, Ph.D., Ryan M. Young, Ph.D., Arthur L. Shaffer, Ph.D., Daniel J. Hodson, M.D., Ph.D., Wenming Xiao, Ph.D., et al.
  

Deutsche Börse Public Dataset

Tutorials

• 10 visualizations to try in Amazon QuickSight with sample data by AWS Big Data Blog
  
• Stock Price Movement Prediction Using The Deutsche Börse Public Dataset & Machine Learning by Originate
  

Tools & Applications

• Streaming XETRA Data Using Apache Spark by Thermobook
  

Foundation Medicine Adult Cancer Clinical Dataset (FM-AD)

Tools & Applications

• Genomic Data Commons by National Cancer Institute
  

Publications

• High-Throughput Genomic Profiling of Adult Solid Tumors Reveals Novel Insights into Cancer Pathogenesis by Ryan J. Hartmaier, Lee A. Albacker, Juliann Chmielecki, Mark Bailey, Jie He, Michael E. Goldberg, Shakti Ramkissoon, James Suh, Julia A. Elvin, Samuel Chiacchia, Garrett M. Frampton, Jeffrey S. Ross, Vincent Miller, Philip J. Stephens and Doron Lipson
  
• Targeted next-generation sequencing of advanced prostate cancer identifies potential therapeutic targets and disease heterogeneity. by Beltran H, Yelensky R, Frampton GM, Park K, Downing SR, MacDonald TY, Jarosz M, Lipson D, Tagawa ST, Nanus DM, Stephens PJ, Mosquera JM, Cronin MT, Rubin MA
  

GEOS-Chem Input Data

Tutorials

• Tutorial on accessing GEOS-Chem data bucket in S3 by Jiawei Zhuang
  

Publications

• Overview of the GEOSChem-on-cloud project by Atmospheric Chemistry Modeling Group, Harvard University
  
• Running GEOS-Chem on Cloud Computing Platforms, presented at the 8th International GEOS-Chem Meeting by Jiawei Zhuang, et al.
  

NREL Wind Integration National Dataset on AWS

Tools & Applications

• HSDS Examples by Caleb Phillips, Caroline Draxl, John Readey, Jordan Perr-Sauer
  
• Wind Visualization by Jordan Perr-Sauer
  

Publications

• Power from wind: Open data on AWS by Caleb Phillips, Caroline Draxl, John Readey, Jordan Perr-Sauer
  

OpenAQ

Tutorials

• Access OpenAQ data via a filterable SNS topic by OpenAQ
  
• Using Athena to access the whole archive by OpenAQ
  

Tools & Applications

• ARISense by Aerodyne Research, Inc.
  
• hackAIR by hackAir
  
• ropenaq R package by Maëlle Salmon
  
• Smokey: Air Quality Bot by Amrit Sharma
  

SILO climate data on AWS

Tools & Applications

• Convert NetCDF to ESRI ArcASCII or GeoTIFF by SILO
  
• NetCDF Operators to calculate seasonal means by SILO
  
• Python script to calculate a regional mean by SILO
  

Southern California Earthquake Data

Tutorials

• Cactus to Clouds: Processing The SCEDC Open Data Set on AWS by Tim Clements
  
• Getting Started with SCEDC AWS Public Dataset by Ellen Yu
  
• Using Lambda to Process Seismograms by Shang-Lin Chen
  

Storm EVent ImageRy (SEVIR)

Tutorials

• Introduction to SEVIR by Mark Veillette
  
• Using Generators for SEVIR data by Mark Veillette
  

Tools & Applications

• sevir -- python utilities for working with SEVIR dataset by Mark Veillette
  

USGS 3DEP LiDAR Point Clouds

Tutorials

• Using Lambda Layers with USGS 3DEP LiDAR Point Clouds by Howard Butler
  
• WebGL Visualization of USGS 3DEP Lidar Point Clouds with Potree and Plasio.js by Connor Manning
  

Publications

• USGS 3DEP Lidar Point Cloud Now Available as Amazon Public Dataset by Department of the Interior, U.S. Geological Survey
  

Variant Effect Predictor (VEP) and the Loss-Of-Function Transcript Effect Estimator (LOFTEE) Plugin

Tools & Applications

• Hail by Neale Lab
  
• Loss-Of-Function Transcript Effect Estimator (LOFTEE) by Konrad Karczewski
  
• Variant Effect Predictor (VEP) by Ensembl
  

Africa Soil Information Service (AfSIS) Soil Chemistry

Tutorials

• AfSIS Soil Chemistry - Usage Tutorial by QED
  

Publications

• Goalkeepers 2018, Soil - The Big Data Beneath Your Feet by QED
  

Allen Mouse Brain Atlas

Tools & Applications

• Allen Mouse Brain Atlas by Allen Institute for Brain Science
  

Publications

• Genome-wide atlas of gene expression in the adult mouse brain by Ed Lein, et al.
  

Amazon Bin Image Dataset

Publications

• Amazon Bin Image Dataset Challenge by silverbottlep
  
• Amazon Inventory Reconciliation using AI by Pablo Rodriguez Bertorello, Sravan Sripada, Nutchapol Dendumrongsup
  

Atmospheric Models from Météo-France

Tools & Applications

• Windguru.cz by Windguru
  
• Windy.com by Windy
  

Broad Genome References

Tutorials

• Using Amazon FSx for Lustre for Genomics Workflows on AWS by W. Lee Pang
  BatchFSx

Tools & Applications

• Genomics Workflows on AWS - Cromwell on AWS by W. Lee Pang
  

Cancer Genome Characterization Initiatives - Burkitt Lymphoma Genome Sequencing Project

Tools & Applications

• Genomic Data Commons by National Cancer Institute
  

Publications

• Genome-wide discovery of somatic coding and noncoding mutations in pediatric endemic and sporadic Burkitt lymphoma by Bruno M. Grande, Daniela S. Gerhard, Aixiang Jiang, Nicholas B. Griner, Jeremy S. Abramson, Thomas B. Alexander , Hilary Allen, Leona W. Ayers, Jeffrey M. Bethony , Kishor Bhatia , Jay Bowen , Corey Casper , John Kim Choi , Luka Culibrk , Tanja M. Davidsen, Maureen A. Dyer, Julie M. Gastier-Foster, Patee Gesuwan, Timothy C. Greiner, Thomas G. Gross, Benjamin Hanf, Nancy Lee Harris, Yiwen He, John D. Irvin, Elaine S. Jaffe, Steven J. M. Jones, Patrick Kerchan, Nicole Knoetze, Fabio E. Leal, Tara M. Lichtenberg, Yussanne Ma, Jean Paul Martin, Marie-Reine Martin, Sam M. Mbulaiteye, Charles G. Mullighan, Andrew J. Mungall, Constance Namirembe, Karen Novik, Ariela Noy, Martin D. Ogwang, Abraham Omoding, Jackson Orem, Steven J. Reynolds, Christopher K. Rushton, John T. Sandlund, Roland Schmitz, Cynthia Taylor, Wyndham H. Wilson, George W. Wright, Eric Y. Zhao, Marco A. Marra, Ryan D. Morin, Louis M. Staudt
  

ECMWF ERA5 Reanalysis

Tutorials

• Accessing ERA5 Data on S3 Using Boto by Intertrust Technologies Corporation
  
• ERA5 tutorial using the Planet OS API by Intertrust Technologies Corporation
  

Hubble Space Telescope Public Data

Tutorials

• Exploring AWS Lambda with cloud-hosted Hubble public data by Arfon Smith
  

Publications

• Making HST Public Data Available on AWS by Arfon Smith
  

MIMIC-III (‘Medical Information Mart for Intensive Care’)

Tutorials

• Perform biomedical informatics without a database using MIMIC-III data and Amazon Athena by James Wiggins, Alistair Johnson
  AthenaGlue

Tools & Applications

• MIMIC-code GitHub repository by Alistair Johnson
  

NAIP on AWS

Tools & Applications

• EOS Land Viewer by Earth Observing System
  
• VoyagerSearch showing off Batch + NAIP by Voyager
  

NASA NEX

Tutorials

• Accessing and plotting NASA-NEX data, from GEOSChem-on-cloud tutorial. by Jiawei Zhuang
  

Tools & Applications

• Azavea Climate API by Azavea
  

NREL National Solar Radiation Database on AWS

Tools & Applications

• NSRDB Viewer by Manajit Sengupta, Yu Xe, Anthony Lopez, Aron Habte, Galen Maclaurin, James Shelby, Paul Edwards
  

Publications

• The National Solar Radiation Data Base (NSRDB) by Manajit Sengupta, Yu Xe, Anthony Lopez, Aron Habte, Galen Maclaurin, James Shelby
  

National Cancer Institute Center for Cancer Research - Diffuse Large B Cell Lymphoma (DLBCL) Genomics and Expression

Tools & Applications

• Genomic Data Commons by National Cancer Institute
  

Publications

• Genetics and Pathogenesis of Diffuse Large B Cell Lymphoma by Roland Schmitz, Ph.D., George W. Wright, Ph.D., Da Wei Huang, M.D., et al.
  

Open City Model (OCM)

Tutorials

• Running queries on Open City Model using AWS Athena by Allen Gilliland
  
• Using Open City Model with the 3dCityDB by Allen Gilliland
  

OpenEEW

Tutorials

• Analyzing a magnitude 7.2 earthquake in Mexico using Python by Grillo
  

Tools & Applications

• OpenEEW library for Python by Grillo
  

Oregon Health & Science University Chronic Neutrophilic Leukemia Dataset

Tools & Applications

• Genomic Data Commons by National Cancer Institute
  

Publications

• Genomic landscape of neutrophilic leukemias of ambiguous diagnosis by Zhang H, Wilmot B, Bottomly D et al.
  

Pancreatic Cancer Organoid Profiling

Tools & Applications

• Genomic Data Commons by National Cancer Institute
  

Publications

• Organoid Profiling Identifies Common Responders to Chemotherapy in Pancreatic Cancer by Tiriac H, Belleau P, Engle DD, et al.
  

Rapid7 FDNS ANY Dataset

Tutorials

• Creating a Project Sonar FDNS API with AWS by Evan Perotti at SecurityRiskAdvisors
  
• How to Conduct DNS Reconnaissance for $.02 Using Rapid7 Open Data and AWS by Shan Sikdar at Rapid7
  

Sentinel-1 SLC dataset for South and Southeast Asia, Taiwan, Korea and Japan

Tutorials

• Sentinel-1 Opendataset Wiki and Tutorials by Earth Observatory of Singapore
  

Publications

• Rapid flood and damage mapping using synthetic aperture radar in response to Typhoon Hagibis, Japan by Cheryl W. J. Tay, Sang-Ho Yun, Shi Tong Chin, Alok Bhardwaj, Jungkyo Jung & Emma M. Hill
  

Terra Fusion Data Sampler

Tutorials

• Basic Terra fusion product algorithm theoretical basis and data specifications by Zhao, Guangu; Yang, Muqun; Clipp, Landon; Gao, Yizhao; Lee, Joe H.
  

Tools & Applications

• TerraFusion GitHub by University of Illinois
  

UK Met Office Atmospheric Deterministic and Probabilistic Forecasts

Tutorials

• Met Office AWS Earth data - Getting Started by Jacob Tomlinson
  
• Met Office AWS Earth data - Subscribing to data by Jacob Tomlinson
  

1000 Genomes

Publications

• Exploratory data analysis of genomic datasets using ADAM and Mango with Apache Spark on Amazon EMR by Alyssa Marrow
  

AWS iGenomes

Tools & Applications

• nf-core analysis pipelines by Phil Ewels
  

Allen Brain Observatory - Visual Coding AWS Public Data Set

Tutorials

• Use the Allen Brain Observatory – Visual Coding on AWS by Nika Keller, David Feng
  

Cell Painting Image Collection

Publications

• Example submission for the 2018 CytoData Hackathon (in R and Python) by Juan Caicedo, Tim Becker
  

Ford Multi-AV Seasonal Dataset

Tutorials

• Ford AV Dataset Tutorial by Ford Motor Company
  

GATK Test Data

Tools & Applications

• Genomics Workflows on AWS - Cromwell on AWS by W. Lee Pang
  

Human Cancer Models Initiative (HCMI) Cancer Model Development Center

Tools & Applications

• Genomic Data Commons by National Cancer Institute
  

LOFAR ELAIS-N1 cycle 2 observations on AWS

Publications

• Calibration of LOFAR ELAIS-N1 data in the Amazon cloud by J. Sabater
  

NOAA Global Historical Climatology Network Daily (GHCN-D)

Tutorials

• Visualize over 200 years of global climate data using Amazon Athena and Amazon QuickSight by Conor Delaney
  

QIIME 2 User Tutorial Datasets

Tutorials

• Installing QIIME 2 using Amazon Web Services by The QIIME 2 Development Team
  

SILAM Air Quality

Tutorials

• Simple examples by Roope Tervo
  

Safecast

Tools & Applications

• Safecast Map by Nick Dolezal
  

Tabula Muris

Publications

• Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris. by Tabula Muris Consortium (2019)
  

Transiting Exoplanet Survey Satellite (TESS)

Publications

• TESS data available on AWS by Arfon Smith
  

U.S. Census ACS PUMS

Tutorials

• Setting up Blazegraph on EC2 by data.world
  

Voices Obscured in Complex Environmental Settings (VOiCES)

Tutorials

• Getting started with VOiCES data by M.A. Barrios
  

Xiph.Org Test Media

Tutorials

• Encoding video with AV1 on EC2 by Thomas Daede
  

Yale-CMU-Berkeley (YCB) Object and Model Set

Publications

• Benchmarking in Manipulation Research: Using the Yale-CMU-Berkeley Object and Model Set by Berk Calli, Aaron Walsman, Arjun Singh, Siddhartha Srinivasa, Pieter Abbeel, Aaron M Dollar
  
• Label Fusion: A Pipeline for Generating Ground Truth Labels for Real RGBD Data of Cluttered Scenes by Pat Marion, Peter R. Florence, Lucas Manuelli, Russ Tedrake
  
• Pre-touch sensing for sequential manipulation by Boling Yang, Patrick Lancaster, Joshua R. Smith
  
• The Closure Signature: A Functional Approach to Model Underactuated Compliant Robotic Hands by Maria Pozzi, Gionata Salvietti, João Bimbo, Monica Malvezzi, Domenico Prattichizzo
  

ZINC Database

Publications

• ZINC Database by John Irwin
  

iHART Whole Genome Sequencing Data Set

Publications

• Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks by Ruzzo et al. (2020)
  

COVID-19 Data Lake

Tutorials

• A public data lake for analysis of COVID-19 data by AWS Data Lake Team
  AthenaComprehendKendraQuickSight

Tools & Applications

• CloudFormation template for Glue Catalog table definitions by AWS Data Lake Team
  
• Explore the COVID-19 data lake public S3 bucket by AWS Data Lake Team
  

Cell Organelle Segmentation in Electron Microscopy (COSEM) on AWS

Publications

• Correlative three-dimensional super-resolution and block-face electron microscopy of whole vitreously frozen cells. by David P. Hoffman1, Gleb Shtengel, C. Shan Xu, Kirby R. Campbell, Melanie Freeman, Lei Wang, Daniel E. Milkie, H. Amalia Pasolli, Nirmala Iyer, John A. Bogovic, Daniel R. Stabley, Abbas Shirinifard, Song Pang, David Peale, Kathy Schaefer, Wim Pomp, Chi-Lun Chang, Jennifer Lippincott-Schwartz, Tom Kirchhausen1, David J. Solecki, Eric Betzig, Harald F. Hess.
  
• Enhanced FIB-SEM systems for large-volume 3D imaging by C. Shan Xu, Kenneth J. Hayworth, Zhiyuan Lu, Patricia Grob, Ahmed M. Hassan, José G. García-Cerdán, Krishna K. Niyogi, Eva Nogales, Richard J. Weinberg, Harald F. Hess.
  

RAPID NRT Flood Maps

Publications

• Inundation Extent Mapping by Synthetic Aperture Radar: A Review by Xinyi Shen, Dacheng Wang, Kebiao Mao, Emmanouil Anagnostou, and Yang Hong
  
• Near Real-Time Nonobstructed Flood Inundation Mapping by Synthetic Aperture Radar by Xinyi Shen, Emmanouil N. Anagnostou, George H. Allen, G. Robert Brakenridge, Albert J. Kettner
  

Answer Reformulation

Publications

• Voice-based Reformulation of Community Answers by Simone Filice, Nachshon Cohen & David Carmel
  

COVID-19 Open Research Dataset (CORD-19)

Tools & Applications

• COVID-19 Open Research Dataset Challenge (CORD-19) by Kaggle
  

Geosnap Data, Center for Geospatial Sciences

Tools & Applications

• Geosnap User Guide by Eli Knaap
  

Humor Detection from Product Question Answering Systems

Publications

• Humor Detection in Product Question Answering Systems. by Yftah Ziser, Elad Kravi & David Carmel
  

MODIS MYD13A1, MOD13A1, MYD11A1, MOD11A1, MCD43A4

Tools & Applications

• Astraea Earth OnDemand by Astraea, Inc.
  

Swiss Public Transport Stops

Tools & Applications

• Map Viewer by Swiss Geoportal