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Cancer Genome Characterization Initiatives - Burkitt Lymphoma, HIV+ Cervical Cancer

cancer genomic life sciences STRIDES transcriptomics

Description

The Cancer Genome Characterization Initiatives (CGCI) program supports cutting-edge genomics research of adult and pediatric cancers. CGCI investigators develop and apply advanced sequencing methods that examine genomes, exomes, and transcriptomes within various types of tumors. The program includes Burkitt Lymphoma Genome Sequencing Project (BLGSP) project and HIV+ Tumor Molecular Characterization Project - Cervical Cancer (HTMCP-CC) project. The dataset contains open Clinical Supplement, Biospecimen Supplement, RNA-Seq Gene Expression Quantification, miRNA-Seq Isoform Expression Quantification, and miRNA Expression Quantification data. This dataset also contains controlled WGS/Targeted Sequencing/RNA-Seq/miRNA-Seq Aligned Reads, and RNA-Seq Splice Junction Quantification

Update Frequency

Genomic Data Commons (GDC) is source of truth for this dataset; GDC offers monthly data releases, although this dataset may not be updated at every release.

License

NIH Genomic Data Sharing Policy: https://gdc.cancer.gov/access-data/data-access-policies

Documentation

https://ocg.cancer.gov/programs/cgci

Managed By

See all datasets managed by Center for Translational Data Science at The University of Chicago.

Contact

dcf-support@datacommons.io

How to Cite

Cancer Genome Characterization Initiatives - Burkitt Lymphoma, HIV+ Cervical Cancer was accessed on DATE from https://registry.opendata.aws/cgci.

Usage Examples

Tools & Applications
Publications

Resources on AWS

  • Description
    Clinical Supplement, Biospecimen Supplement, RNA-Seq Gene Expression Quantification, miRNA-Seq Isoform Expression Quantification, miRNA-Seq miRNA Expression Quantification
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::gdc-cgci-blgsp-phs000235-2-open
    AWS Region
    us-east-1
    AWS CLI Access (No AWS account required)
    aws s3 ls --no-sign-request s3://gdc-cgci-blgsp-phs000235-2-open/
  • Description
    Clinical Supplement, Biospecimen Supplement, RNA-Seq Gene Expression Quantification, miRNA-Seq Isoform Expression Quantification, miRNA-Seq miRNA Expression Quantification
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::gdc-cgci-phs000235-2-open
    AWS Region
    us-east-1
    AWS CLI Access (No AWS account required)
    aws s3 ls --no-sign-request s3://gdc-cgci-phs000235-2-open/
  • Description
    WGS/Targeted Sequencing/RNA-Seq/miRNA-Seq Aligned Reads, RNA-Seq Splice Junction Quantification
    Resource type
    S3 Bucket Controlled Access
    Amazon Resource Name (ARN)
    arn:aws:s3:::gdc-cgci-phs000235-2-controlled
    AWS Region
    us-east-1

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