Serratus: Ultra-deep Search for Novel Viruses - Versioned Data Release

Description

Serratus is a collaborative open science project for ultra-rapid discovery of known and unknown coronaviruses in response to the COVID-19 pandemic through re-analysis of publicly available genomic data. Our resulting vertebrate viral alignment data is explorable via the Serratus Explorer and directly accessible on Amazon S3.

Update Frequency

Quarterly

License

CC-0 1.0

Documentation

https://github.com/ababaian/serratus/wiki/Access-Data-Release

Managed By

Serratus / UBC Cloud Innovation Centre

See all datasets managed by Serratus / UBC Cloud Innovation Centre.

Contact

https://github.com/ababaian/serratus/issues

How to Cite

Serratus: Ultra-deep Search for Novel Viruses - Versioned Data Release was accessed on DATE from https://registry.opendata.aws/serratus-lovelywater.

Usage Examples

Tools & Applications

• Serratus Explorer by Serratus Team
  
• Tantalus: An R Package for exploration of Serratus data by Serratus Team
  

Publications

• coronaSPAdes. From biosynthetic gene clusters to RNA viral assemblies by Meleshko D., Hajirasouliha I., and Korobeynikov A. (2021)
  
• Diversification of mammalian deltaviruses by host shifting by Bergner L.M., Orton R.J., et al (2021)
  
• Petabase-scale sequence alignment catalyses viral discovery by Edgar R., Taylor J., Lin V., et al (2021)
  
• Ribovirus classification by a polymerase barcode sequence by Babaian A., and Edgar R. (2021)