amino acid bioinformatics chemical biology genomic graph metagenomics microbiome pharmaceutical protein
Precomputed SocialGene Neo4j graph databases of various sizes built from RefSeq genomes and MIBiG BGCs.
This database is currently what was published in our 2024 paper introducing SocialGene, but an updated database may be added in the future.
Where applicable, SocialGene data is released under CC0 (https://creativecommons.org/public-domain/cc0/), some individual components of the database may have their own license (see https://socialgene.github.io/precomputed_databases/2023_v0.4.1/general)
https://socialgene.github.io/precomputed_databases/2023_v0.4.1/aws/aws
University of Wisconsin-Madison
See all datasets managed by University of Wisconsin-Madison.
https://github.com/socialgene/socialgene.github.io/issues
SocialGene RefSeq Databases was accessed on DATE
from https://registry.opendata.aws/socialgene. C. M. Clark, J. C. Kwan, Creating and leveraging bespoke large-scale knowledge graphs for comparative genomics and multi-omics drug discovery with SocialGene. bioRxivorg, www.biorxiv.org/content/10.1101/2024.08.16.608329v1 (2024).
arn:aws:s3:::socialgene-open-data
us-east-2
aws s3 ls --no-sign-request s3://socialgene-open-data/