Description
The Clinical Proteomic Tumor Analysis Consortium (CPTAC) is a national effort to accelerate the
understanding of the molecular basis of cancer through the application of large-scale proteome and
genome analysis, or proteogenomics. CPTAC-3 is the Phase III of the CPTAC Initiative. The dataset
contains open RNA-Seq Gene Expression Quantification data.
Update Frequency
Genomic Data Commons (GDC) is source of truth for this dataset; GDC offers monthly data releases,
although this dataset may not be updated at every release.
License
NIH Genomic Data Sharing Policy: https://gdc.cancer.gov/access-data/data-access-policies
Documentation
https://cptac-data-portal.georgetown.edu/cptac/public?scope=Phase+III
Managed By
See all datasets managed by Center for Translational Data Science at The University of Chicago.
Contact
dcf-support@datacommons.io
How to Cite
Clinical Proteomic Tumor Analysis Consortium 3 (CPTAC-3) was accessed on DATE from https://registry.opendata.aws/cptac-3.
Usage Examples
Tools & Applications
Publications
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Evaluation of NCI-7 Cell Line Panel as a Reference Material for Clinical Proteomics by Clark DJ, Hu Y, Bocik W, Chen L, Schnaubelt M, Roberts R, Shah P, Whiteley G, Zhang H
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Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma by Clark DJ, Dhanasekaran SM, Petralia F, Pan J, Song X, Hu Y, da Veiga Leprevost F, Reva B,
Lih TM, Chang HY, Ma W, Huang C, Ricketts CJ, Chen L1, Krek A, Li Y, Rykunov D, Li QK, Chen
LS, Ozbek U, Vasaikar S, Wu Y, Yoo S, Chowdhury S, Wyczalkowski MA, Ji J, Schnaubelt M, Kong
A, Sethuraman S, Avtonomov DM, Ao M, Colaprico A, Cao S, Cho KC, Kalayci S, Ma S, Liu W,
Ruggles K, Calinawan A, Gümüş ZH, Geizler D, Kawaler E, Teo GC, Wen B, Zhang Y, Keegan S, Li
K, Chen F, Edwards N, Pierorazio PM, Chen XS, Pavlovich CP, Hakimi AA, Brominski G, Hsieh
JJ, Antczak A, Omelchenko T, Lubinski J, Wiznerowicz M, Linehan WM, Kinsinger CR,
Thiagarajan M, Boja ES, Mesri M, Hiltke T, Robles AI, Rodriguez H, Qian J, Fenyö D, Zhang B,
Ding L, Schadt E, Chinnaiyan AM, Zhang Z, Omenn GS, Cieslik M, Chan DW, Nesvizhskii AI, Wang
P, Zhang H; Clinical Proteomic Tumor Analysis Consortium
