recount3

Description

recount3 is an online resource consisting of RNA-seq gene, exon, and exon-exon junction counts as well as coverage bigWig files for 8,679 and 10,088 different studies for human and mouse respectively. It is the third generation of the ReCount project and part of recount.bio. recount2 is also included for historical purposes. The pipeline used to generate the data in recount3 (but not recount2) is available here.

Update Frequency

Not currently updated

License

recount3 is Public Domain, recount2 is CC0

Documentation

https://rna.recount.bio/

Managed By

Johns Hopkins University

See all datasets managed by Johns Hopkins University.

Contact

https://rna.recount.bio/docs/how-to-ask-for-help.html

How to Cite

recount3 was accessed on DATE from https://registry.opendata.aws/recount. Additionally, please cite Wilks, C., Zheng, S.C., Chen, F.Y. et al. recount3: summaries and queries for large-scale RNA-seq expression and splicing. Genome Biol 22, 323 (2021). https://doi.org/10.1186/s13059-021-02533-6 if referencing the recount3 data or the Monorail software in a publication. If referencing recount2 data, please use this citation: Collado-Torres, L., Nellore, A., Kammers, K. et al. Reproducible RNA-seq analysis using recount2. Nat Biotechnol 35, 319–321 (2017). https://doi.org/10.1038/nbt.3838.

Usage Examples

Tutorials

• recount3 quick start guide by Leonardo Collado-Torres