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MONKEY

cancer classification computational pathology computer vision deep learning digital pathology grand-challenge.org histopathology imaging life sciences machine learning medical image computing medical imaging

Description

This dataset contains the training data for the Machine learning for Optimal detection of iNflammatory cells in the KidnEY or MONKEY challenge. The MONKEY challenge focuses on the automated detection and classification of inflammatory cells, specifically monocytes and lymphocytes, in kidney transplant biopsies using Periodic acid-Schiff (PAS) stained whole-slide images (WSI). It contains 80 WSI, collected from 4 different pathology institutes, with annotated regions of interest. For each WSI up to 3 different PAS scans and one IHC slide scan are available. This dataset and challenge support the development of AI models that can aid in the diagnostic process, reduce pathologists’ workload, and improve patient outcomes in renal transplantation.

Update Frequency

As required

License

CC BY-NC-SA 4.0

Documentation

https://monkey.grand-challenge.org/

Managed By

Radboud University Medical Center

See all datasets managed by Radboud University Medical Center.

Contact

linda.studer@radboudumc.nl

How to Cite

MONKEY was accessed on DATE from https://registry.opendata.aws/monkey.

Usage Examples

Tools & Applications

Resources on AWS

  • Description
    PAS- and IHC-stained whole slide images with corresponding dot annotaions for inflammatory cells (monocytes and lymphocytes) in regions of interest.
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::monkey-training
    AWS Region
    us-west-2
    AWS CLI Access (No AWS account required)
    aws s3 ls --no-sign-request s3://monkey-training/

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