Name: Google Brain Genomics Sequencing Dataset for Benchmarking and Development
License: CC0 1.0

amazon.science bioinformatics fastq genetic genomic life sciences long read sequencing short read sequencing whole exome sequencing whole genome sequencing

Description

To facilitate benchmarking and development, the Google Brain group has sequenced 9 human samples covering the Genome in a Bottle truth sets on different sequencing instruments, sequencing modalities (Illumina short read and Pacific BioSciences long read), sample preparation protocols, and for whole genome and whole exome capture. The original source of these data are gs://google-brain-genomics-public.

Update Frequency

Occasionally as new derived files (alignment files or variant call files) are generated

License

CC0 1.0

Documentation

https://genomics-benchmark-datasets.s3.amazonaws.com/README.txt

Managed By

See all datasets managed by Amazon Web Services.

Contact

genomics-benchmark-datasets@amazon.com

How to Cite

Google Brain Genomics Sequencing Dataset for Benchmarking and Development was accessed on DATE from https://registry.opendata.aws/google-brain-genomics-public.

Usage Examples

Publications

An Extensive Sequence Dataset of Gold-Standard Samples for Benchmarking and Development by Baid G., Nattestad M., Kolesnikov A., Goel S., Yang H., Chang P., and Carroll A (2020)

Resources on AWS

Description

FASTQ files for nine human samples comprising three parent-child trios at 40X 30X, and 20X coverage for whole genome sequencing and 100X, 75X, and 50X coverage for whole exome sequencing. Four samples are also sequenced with PacBio HiFi as described in Baid et al 2020. Note that this S3 bucket only contains FASTQ files; BAM and VCF files are available at gs://google-brain-genomics-public.

Resource type

S3 Bucket

Amazon Resource Name (ARN)

arn:aws:s3:::genomics-benchmark-datasets/google-brain

AWS Region

us-east-1

AWS CLI Access (No AWS account required)

aws s3 ls --no-sign-request s3://genomics-benchmark-datasets/google-brain/