Cloud Indexes for Bowtie, Kraken, HISAT, and Centrifuge

Description

Genomic tools use reference databases as indexes to operate quickly and efficiently, analogous to how web search engines use indexes for fast querying. Here, we aggregate genomic, pan-genomic and metagenomic indexes for analysis of sequencing data.

Update Frequency

As new data becomes available; roughly quarterly

License

Public Domain

Documentation

https://benlangmead.github.io/aws-indexes/

Managed By

Langmead Lab at Johns Hopkins University & Kim Lab at University of Texas Southwestern

See all datasets managed by Langmead Lab at Johns Hopkins University & Kim Lab at University of Texas Southwestern.

Contact

https://github.com/BenLangmead/aws-indexes/issues

How to Cite

Cloud Indexes for Bowtie, Kraken, HISAT, and Centrifuge was accessed on DATE from https://registry.opendata.aws/jhu-indexes.

Usage Examples

Tutorials

• Table of contents for tutorials for constituent tools by Ben Langmead
  

Publications

• Reducing reference bias using multiple population reference genomes by Chen et al (2020)