ICGC on AWS

Description

The International Cancer Genome Consortium (ICGC) coordinates projects with the common aim of accelerating research into the causes and control of cancer. The PanCancer Analysis of Whole Genomes (PCAWG) study is an international collaboration to identify common patterns of mutation in whole genomes from ICGC. More than 2,400 consistently analyzed genomes corresponding to over 1,100 unique ICGC donors are now freely available on Amazon S3 to credentialed researchers subject to ICGC data sharing policies.

Update Frequency

New data is added as soon as it is available.

License

Data use is subject to the access and publication polices of the source. Distribution of the data is subject to ICGC Trusted Partner Approval. More information on terms of use is available at https://icgc.org/daco

Documentation

https://dcc.icgc.org/icgc-in-the-cloud/aws

Managed By

International Cancer Genome Collaboratory

See all datasets managed by International Cancer Genome Collaboratory.

Contact

dcc-support@icgc.org

How to Cite

ICGC on AWS was accessed on DATE from https://registry.opendata.aws/icgc.

Usage Examples

Tutorials

• AWS Pancancer Workflow Launcher by Solomon Shorser
  

Publications

• Pan-cancer analysis of whole genomes by The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium (2020)
  
• Analyses of non-coding somatic drivers in 2,693 cancer whole genomes by Rheinbay et al (2020)
  
• Genomic basis of RNA alterations in cancer by PCAWG Transcriptome Core Group et al. (2020)
  
• Patterns of somatic structural variation in human cancer genomes by Li et al. (2020)
  
• The evolutionary history of 2,658 cancers by Gerstung et al (2020)
  
• The repertoire of mutational signatures in human cancer by Alexandrov et al (2020)