assembly bacteria bioinformatics fasta genomic life sciences microbial genomics short read sequencing whole genome sequencing
All bacterial isolate whole-genome sequencing data from INSDC, uniformly assembled, quality-controlled, annotated, and searchable.
The current release is for all SRA bacterial isolate data up to August 2024. The colllection will be updated occasionally, with no fixed schedule.
European Bioinformatics Institute
See all datasets managed by European Bioinformatics Institute.
https://github.com/AllTheBacteria/AllTheBacteria/issues
AllTheBacteria was accessed on DATE
from https://registry.opendata.aws/allthebacteria.
arn:aws:s3:::allthebacteria-assemblies
eu-west-2
aws s3 ls --no-sign-request s3://allthebacteria-assemblies/
arn:aws:s3:::allthebacteria-phylogeneticbatches
eu-west-2
aws s3 ls --no-sign-request s3://allthebacteria-phylogeneticbatches/
arn:aws:s3:::allthebacteria-metadata
eu-west-2
aws s3 ls --no-sign-request s3://allthebacteria-metadata/
arn:aws:s3:::allthebacteria-lexicmap
eu-west-2
aws s3 ls --no-sign-request s3://allthebacteria-lexicmap/