WashU Repeat Browser genomic and epigenomic profiles

Description

The WashU Repeat Browser dataset provides processed genomic and epigenomic profiles for studying repetitive elements in human (hg38) and mouse (mm10). It contains 8,774 indexed entries spanning CAGE, epigenomic, conservation, transcription-factor and repeat-overlap resources in CSV, BigWig and Zarr formats. The data support genome-wide, repeat-family and consensus-level analysis in Repeat Browser and standard bioinformatics tools.

Update Frequency

The collection is updated irregularly as new supported public datasets and processed profiles become available.

License

Creative Commons Attribution 4.0 International (CC BY 4.0): https://creativecommons.org/licenses/by/4.0/

Documentation

https://github.com/twlab/Repeat-Browser/blob/main/WashU_Repeat_Browser_AWS/README.md

Managed By

Ting Wang Laboratory, Department of Genetics, Washington University in St. Louis

See all datasets managed by Ting Wang Laboratory, Department of Genetics, Washington University in St. Louis.

Contact

Daofeng Li (dli23@wustl.edu); Jiawei Shen (jiaweishen@wustl.edu)

How to Cite

WashU Repeat Browser genomic and epigenomic profiles was accessed on DATE from https://registry.opendata.aws/washu-repeat-browser. Please cite Shen J, Cheng S, Purushotham D, Zhuo X, Du AY, Zhang W, Li D, Wang T. Exploring the epigenome profiles of repetitive elements with the WashU Repeat Browser. Genome Research. 2025. https://doi.org/10.1101/gr.279764.124

Usage Examples

Tutorials

• Get to Know a Dataset: WashU Repeat Browser by Ting Wang Laboratory
  
  Amazon S3

Tools & Applications

• WashU Repeat Browser by Ting Wang Laboratory
  
• WashU Repeat Browser data-processing workflows by Ting Wang Laboratory
  

Publications

• Exploring the epigenome profiles of repetitive elements with the WashU Repeat Browser by Shen J, Cheng S, Purushotham D, Zhuo X, Du AY, Zhang W, et al.