Registry of Open Data on AWS

Usage examples for all datasets listed in the Registry of Open Data on AWS tagged with openfold.

OpenFold3 Training Data

Tutorials

Deploying OpenFold3 with NVIDIA NIMs on Brev & AWS EC2 by Glòria Macià

Publications

OpenFold3-preview2 Technical Report by The OpenFold3 Team
OpenFold: Retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization by Ahdritz, Gustaf; Bouatta, Nazim; Kadyan, Sachin; Xia, Qinghui; Gerecke, William; O'Donnell, Timothy J, et al

OpenProteinSet

Tutorials

Run inference at scale for OpenFold, a PyTorch-based protein folding ML model, using Amazon EKS by Shubha Kumbadakone, Ankur Srivastava, and Sachin Kadyan
Amazon EKSAmazon FSx

Publications

OpenFold: Retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization by Ahdritz, Gustaf; Bouatta, Nazim; Kadyan, Sachin; Xia, Qinghui; Gerecke, William; O'Donnell, Timothy J, et al
OpenProteinSet: Training data for structural biology at scale by Ahdritz, Gustaf; Bouatta, Nazim; Kadyan, Sachin; Jarosch, Lukas; Berenberg, Daniel; Fisk, Ian, et al

If you want to add a dataset or usage example to this registry, please follow the instructions on the Registry of Open Data on AWS GitHub repository or tell us about your project.