MERRA-2 tavg1_2d_slv_Nx: 2d,1-Hourly,Time-Averaged,Single-Level,Assimilation,Single-Level Diagnostics 0.625 x 0.5 degree

Tutorials

• How to Access GES DISC Data Using Python by James Acker, Jerome Alfred, Helen Amos, Chris Battisto, Thomas Hearty, Alexis Hunzinger, Lena Iredell, Christoph Keller, Binita KC, Carlee Loeser, Ariana Louise, Kristan Morgan, Dieu My T. Nguyen, Dana Ostrenga, Xiaohua Pan, Kanan Patel, Brianna R. Pagán, Andrey Savtchenko, Elliot Sherman, Suhung Shen, Jian Su,Joseph Wysk, Rupesh Shrestha.
  
• How to Read and Plot NetCDF MERRA-2 Data in Python by James Acker, Jerome Alfred, Helen Amos, Chris Battisto, Thomas Hearty, Alexis Hunzinger, Lena Iredell, Christoph Keller, Binita KC, Carlee Loeser, Ariana Louise, Kristan Morgan, Dieu My T. Nguyen, Dana Ostrenga, Xiaohua Pan, Kanan Patel, Brianna R. Pagán, Andrey Savtchenko, Elliot Sherman, Suhung Shen, Jian Su,Joseph Wysk, Rupesh Shrestha.
  

Publications

• 2015b: MERRA-2: Initial Evaluation of the Climate by Bosilovich, M. G., S. Akella, L. Coy, R. Cullather, C. Draper, R. Gelaro, R. Kovach, Q.Liu, A. Molod, P. Norris, K. Wargan, W. Chao, R. Reichle, L. Takacs, Y. Vikhliaev, S. Bloom, A. Collow, S. Firth, G. Labow, G. Partyka, S. Pawson, O. Reale, S. D. Schubert, and M. Suarez
  
• A catchment-based approach to modeling land surface processes in a GCM, Part 1, Model Structure by Koster, R. D., M. J. Suarez, A. Ducharne, M. Stieglitz, and P. Kumar
  
• Assessment of MERRA-2 Land Surface Hydrology Estimates. by Reichle, R. H., C. S. Draper, Q. Liu, M. Girotto, S. P. P. Mahanama, R. D. Koster, and G. J. M. De Lannoy
  
• Data assimilation using incremental analysis updates by Bloom, S., L. Takacs, A. DaSilva, and D. Ledvina
  
• Design and implementation of components in the Earth System Modeling Framework by Collins, N., G. Theurich, C. DeLuca, M. Suarez, A. Trayanov, V. Balaji, P. Li, W. Yang, C. Hill, and A. da Silva
  
• Development of the GEOS-5 atmospheric general circulation model: evolution from MERRA to MERRA2. by Molod, A., L. Takacs, M. Suarez, and J. Bacmeister
  
• Documentation and Validation of the Goddard Earth Observing System (GEOS) Data Assimilation System - Version 4 by Bloom, S., A. da Silva, D. Dee, M. Bosilovich, J.-D. Chern, S. Pawson, S. Schubert, M. Sienkiewicz, I. Stajner, W.-W. Tan, M.-L. Wu
  
• Land Surface Precipitation in MERRA-2. by Reichle, R.H., Q. Liu, R.D. Koster, C.S. Draper, S.P.P. Mahanama, and G.S. Partyka
  
• Numerical aspects of the application of recursive filters to variational statistical analysis. Part I: Spatially homogeneous and isotropic Gaussian covariances by Purser, R. J., W.-S. Wu, D. F. Parrish, and N. M. Roberts
  
• Numerical aspects of the application of recursive filters to variational statistical analysis. Part II: Spatially inhomogeneous and anisotropic general covariances by Purser, R. J., W.-S. Wu, D. F. Parrish, and N. M. Roberts
  
• The MERRA-2 Aerosol Reanalysis, 1980 Onward. Part I: System Description and Data Assimilation Evaluation. by Randles, C. A., A. M. da Silva, V. Buchard, P. R. Colarco, A. Darmenov, R. Govindaraju, A. Smirnov, B. Holben, R. Ferrare, J. Hair, Y.Shinozuka, and C.J. Flynn
  
• The MERRA-2 aerosol reanalysis, 1980 onward. Part II: Evaluation and case studies. by Buchard V., C. A. Randles, A. M. da Silva, A. Darmenov, P. R. Colarco, R. Govindaraju, R. Ferrare, J. Hair, A. J. Beyersdorf, L. D. Ziemba, H. Yu
  
• The Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA-2). by Gelaro, R., W. McCarty, M. J. Suárez, R. Todling, A. Molod, L. Takacs, C. A. Randles, A. Darmenov, M. G. Bosilovich, R. Reichle, et al.
  
• Three-dimensional variational analysis with spatially inhomogeneous covariances by Wu, W.-S., R.J. Purser and D.F. Parrish
  

MERRA-2 inst3_3d_aer_Nv: 3d,3-Hourly,Instantaneous,Model-Level,Assimilation,Aerosol Mixing Ratio 0.625 x 0.5 degree

Tutorials

• How to Access GES DISC Data Using Python by James Acker, Jerome Alfred, Helen Amos, Chris Battisto, Thomas Hearty, Alexis Hunzinger, Lena Iredell, Christoph Keller, Binita KC, Carlee Loeser, Ariana Louise, Kristan Morgan, Dieu My T. Nguyen, Dana Ostrenga, Xiaohua Pan, Kanan Patel, Brianna R. Pagán, Andrey Savtchenko, Elliot Sherman, Suhung Shen, Jian Su,Joseph Wysk, Rupesh Shrestha.
  

Publications

• 2015b: MERRA-2: Initial Evaluation of the Climate by Bosilovich, M. G., S. Akella, L. Coy, R. Cullather, C. Draper, R. Gelaro, R. Kovach, Q.Liu, A. Molod, P. Norris, K. Wargan, W. Chao, R. Reichle, L. Takacs, Y. Vikhliaev, S. Bloom, A. Collow, S. Firth, G. Labow, G. Partyka, S. Pawson, O. Reale, S. D. Schubert, and M. Suarez
  
• A catchment-based approach to modeling land surface processes in a GCM, Part 1, Model Structure by Koster, R. D., M. J. Suarez, A. Ducharne, M. Stieglitz, and P. Kumar
  
• Assessment of MERRA-2 Land Surface Hydrology Estimates. by Reichle, R. H., C. S. Draper, Q. Liu, M. Girotto, S. P. P. Mahanama, R. D. Koster, and G. J. M. De Lannoy
  
• Data assimilation using incremental analysis updates by Bloom, S., L. Takacs, A. DaSilva, and D. Ledvina
  
• Design and implementation of components in the Earth System Modeling Framework by Collins, N., G. Theurich, C. DeLuca, M. Suarez, A. Trayanov, V. Balaji, P. Li, W. Yang, C. Hill, and A. da Silva
  
• Development of the GEOS-5 atmospheric general circulation model: evolution from MERRA to MERRA2. by Molod, A., L. Takacs, M. Suarez, and J. Bacmeister
  
• Documentation and Validation of the Goddard Earth Observing System (GEOS) Data Assimilation System - Version 4 by Bloom, S., A. da Silva, D. Dee, M. Bosilovich, J.-D. Chern, S. Pawson, S. Schubert, M. Sienkiewicz, I. Stajner, W.-W. Tan, M.-L. Wu
  
• Land Surface Precipitation in MERRA-2. by Reichle, R.H., Q. Liu, R.D. Koster, C.S. Draper, S.P.P. Mahanama, and G.S. Partyka
  
• Numerical aspects of the application of recursive filters to variational statistical analysis. Part I: Spatially homogeneous and isotropic Gaussian covariances by Purser, R. J., W.-S. Wu, D. F. Parrish, and N. M. Roberts
  
• Numerical aspects of the application of recursive filters to variational statistical analysis. Part II: Spatially inhomogeneous and anisotropic general covariances by Purser, R. J., W.-S. Wu, D. F. Parrish, and N. M. Roberts
  
• The MERRA-2 Aerosol Reanalysis, 1980 Onward. Part I: System Description and Data Assimilation Evaluation. by Randles, C. A., A. M. da Silva, V. Buchard, P. R. Colarco, A. Darmenov, R. Govindaraju, A. Smirnov, B. Holben, R. Ferrare, J. Hair, Y.Shinozuka, and C.J. Flynn
  
• The MERRA-2 aerosol reanalysis, 1980 onward. Part II: Evaluation and case studies. by Buchard V., C. A. Randles, A. M. da Silva, A. Darmenov, P. R. Colarco, R. Govindaraju, R. Ferrare, J. Hair, A. J. Beyersdorf, L. D. Ziemba, H. Yu
  
• The Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA-2). by Gelaro, R., W. McCarty, M. J. Suárez, R. Todling, A. Molod, L. Takacs, C. A. Randles, A. Darmenov, M. G. Bosilovich, R. Reichle, et al.
  
• Three-dimensional variational analysis with spatially inhomogeneous covariances by Wu, W.-S., R.J. Purser and D.F. Parrish
  

MERRA-2 inst3_3d_asm_Np: 3d,3-Hourly,Instantaneous,Pressure-Level,Assimilation,Assimilated Meteorological Fields

Tutorials

• How to Access GES DISC Data Using Python by James Acker, Jerome Alfred, Helen Amos, Chris Battisto, Thomas Hearty, Alexis Hunzinger, Lena Iredell, Christoph Keller, Binita KC, Carlee Loeser, Ariana Louise, Kristan Morgan, Dieu My T. Nguyen, Dana Ostrenga, Xiaohua Pan, Kanan Patel, Brianna R. Pagán, Andrey Savtchenko, Elliot Sherman, Suhung Shen, Jian Su,Joseph Wysk, Rupesh Shrestha.
  

Publications

• 2015b: MERRA-2: Initial Evaluation of the Climate by Bosilovich, M. G., S. Akella, L. Coy, R. Cullather, C. Draper, R. Gelaro, R. Kovach, Q.Liu, A. Molod, P. Norris, K. Wargan, W. Chao, R. Reichle, L. Takacs, Y. Vikhliaev, S. Bloom, A. Collow, S. Firth, G. Labow, G. Partyka, S. Pawson, O. Reale, S. D. Schubert, and M. Suarez
  
• A catchment-based approach to modeling land surface processes in a GCM, Part 1, Model Structure by Koster, R. D., M. J. Suarez, A. Ducharne, M. Stieglitz, and P. Kumar
  
• Assessment of MERRA-2 Land Surface Hydrology Estimates. by Reichle, R. H., C. S. Draper, Q. Liu, M. Girotto, S. P. P. Mahanama, R. D. Koster, and G. J. M. De Lannoy
  
• Data assimilation using incremental analysis updates by Bloom, S., L. Takacs, A. DaSilva, and D. Ledvina
  
• Design and implementation of components in the Earth System Modeling Framework by Collins, N., G. Theurich, C. DeLuca, M. Suarez, A. Trayanov, V. Balaji, P. Li, W. Yang, C. Hill, and A. da Silva
  
• Development of the GEOS-5 atmospheric general circulation model: evolution from MERRA to MERRA2. by Molod, A., L. Takacs, M. Suarez, and J. Bacmeister
  
• Documentation and Validation of the Goddard Earth Observing System (GEOS) Data Assimilation System - Version 4 by Bloom, S., A. da Silva, D. Dee, M. Bosilovich, J.-D. Chern, S. Pawson, S. Schubert, M. Sienkiewicz, I. Stajner, W.-W. Tan, M.-L. Wu
  
• Land Surface Precipitation in MERRA-2. by Reichle, R.H., Q. Liu, R.D. Koster, C.S. Draper, S.P.P. Mahanama, and G.S. Partyka
  
• Numerical aspects of the application of recursive filters to variational statistical analysis. Part I: Spatially homogeneous and isotropic Gaussian covariances by Purser, R. J., W.-S. Wu, D. F. Parrish, and N. M. Roberts
  
• Numerical aspects of the application of recursive filters to variational statistical analysis. Part II: Spatially inhomogeneous and anisotropic general covariances by Purser, R. J., W.-S. Wu, D. F. Parrish, and N. M. Roberts
  
• The MERRA-2 Aerosol Reanalysis, 1980 Onward. Part I: System Description and Data Assimilation Evaluation. by Randles, C. A., A. M. da Silva, V. Buchard, P. R. Colarco, A. Darmenov, R. Govindaraju, A. Smirnov, B. Holben, R. Ferrare, J. Hair, Y.Shinozuka, and C.J. Flynn
  
• The MERRA-2 aerosol reanalysis, 1980 onward. Part II: Evaluation and case studies. by Buchard V., C. A. Randles, A. M. da Silva, A. Darmenov, P. R. Colarco, R. Govindaraju, R. Ferrare, J. Hair, A. J. Beyersdorf, L. D. Ziemba, H. Yu
  
• The Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA-2). by Gelaro, R., W. McCarty, M. J. Suárez, R. Todling, A. Molod, L. Takacs, C. A. Randles, A. Darmenov, M. G. Bosilovich, R. Reichle, et al.
  
• Three-dimensional variational analysis with spatially inhomogeneous covariances by Wu, W.-S., R.J. Purser and D.F. Parrish
  

MERRA-2 inst3_3d_asm_Nv: 3d,3-Hourly,Instantaneous,Model-Level,Assimilation,Assimilated Meteorological Fields 0.625 x 0.5 degree

Tutorials

• How to Access GES DISC Data Using Python by James Acker, Jerome Alfred, Helen Amos, Chris Battisto, Thomas Hearty, Alexis Hunzinger, Lena Iredell, Christoph Keller, Binita KC, Carlee Loeser, Ariana Louise, Kristan Morgan, Dieu My T. Nguyen, Dana Ostrenga, Xiaohua Pan, Kanan Patel, Brianna R. Pagán, Andrey Savtchenko, Elliot Sherman, Suhung Shen, Jian Su,Joseph Wysk, Rupesh Shre
  

Publications

• 2015b: MERRA-2: Initial Evaluation of the Climate by Bosilovich, M. G., S. Akella, L. Coy, R. Cullather, C. Draper, R. Gelaro, R. Kovach, Q.Liu, A. Molod, P. Norris, K. Wargan, W. Chao, R. Reichle, L. Takacs, Y. Vikhliaev, S. Bloom, A. Collow, S. Firth, G. Labow, G. Partyka, S. Pawson, O. Reale, S. D. Schubert, and M. Suarez
  
• A catchment-based approach to modeling land surface processes in a GCM, Part 1, Model Structure by Koster, R. D., M. J. Suarez, A. Ducharne, M. Stieglitz, and P. Kumar
  
• Assessment of MERRA-2 Land Surface Hydrology Estimates. by Reichle, R. H., C. S. Draper, Q. Liu, M. Girotto, S. P. P. Mahanama, R. D. Koster, and G. J. M. De Lannoy
  
• Data assimilation using incremental analysis updates by Bloom, S., L. Takacs, A. DaSilva, and D. Ledvina
  
• Design and implementation of components in the Earth System Modeling Framework by Collins, N., G. Theurich, C. DeLuca, M. Suarez, A. Trayanov, V. Balaji, P. Li, W. Yang, C. Hill, and A. da Silva
  
• Development of the GEOS-5 atmospheric general circulation model: evolution from MERRA to MERRA2. by Molod, A., L. Takacs, M. Suarez, and J. Bacmeister
  
• Documentation and Validation of the Goddard Earth Observing System (GEOS) Data Assimilation System - Version 4 by Bloom, S., A. da Silva, D. Dee, M. Bosilovich, J.-D. Chern, S. Pawson, S. Schubert, M. Sienkiewicz, I. Stajner, W.-W. Tan, M.-L. Wu
  
• Land Surface Precipitation in MERRA-2. by Reichle, R.H., Q. Liu, R.D. Koster, C.S. Draper, S.P.P. Mahanama, and G.S. Partyka
  
• Numerical aspects of the application of recursive filters to variational statistical analysis. Part I: Spatially homogeneous and isotropic Gaussian covariances by Purser, R. J., W.-S. Wu, D. F. Parrish, and N. M. Roberts
  
• Numerical aspects of the application of recursive filters to variational statistical analysis. Part II: Spatially inhomogeneous and anisotropic general covariances by Purser, R. J., W.-S. Wu, D. F. Parrish, and N. M. Roberts
  
• The MERRA-2 Aerosol Reanalysis, 1980 Onward. Part I: System Description and Data Assimilation Evaluation. by Randles, C. A., A. M. da Silva, V. Buchard, P. R. Colarco, A. Darmenov, R. Govindaraju, A. Smirnov, B. Holben, R. Ferrare, J. Hair, Y.Shinozuka, and C.J. Flynn
  
• The MERRA-2 aerosol reanalysis, 1980 onward. Part II: Evaluation and case studies. by Buchard V., C. A. Randles, A. M. da Silva, A. Darmenov, P. R. Colarco, R. Govindaraju, R. Ferrare, J. Hair, A. J. Beyersdorf, L. D. Ziemba, H. Yu
  
• The Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA-2). by Gelaro, R., W. McCarty, M. J. Suárez, R. Todling, A. Molod, L. Takacs, C. A. Randles, A. Darmenov, M. G. Bosilovich, R. Reichle, et al.
  
• Three-dimensional variational analysis with spatially inhomogeneous covariances by Wu, W.-S., R.J. Purser and D.F. Parrish
  

NOAA Water-Column Sonar Data Archive

Tutorials

• Frequency Differencing with Raw Data by Carrie Wall
  
• Plotting Raw EK60 Data by Carrie Wall
  
• Reading and Plotting Bottom Data by Carrie Wall
  
• Reading and Plotting Processed CSV Data by Carrie Wall
  

Tools & Applications

• pyEcholab - an open-source, python-based toolkit for reading, processing, plotting, and exporting fisheries acoustic echosounder data by Rick Towler, Chuck Anderson, Veronica Martinez, Pamme Crandell
  
• Water Column Sonar Data Explorer - Map viewer for exploring sonar water column data by NCEI, NOAA
  

Publications

• Building an Accessible Archive for Water Column Sonar Data by Carrie Wall
  
• Increasing the accessibility of acoustic data through global access and imagery by Carrie Wall, Michael Jech, and Susan McLean
  

Pacific Ocean Sound Recordings

Tutorials

• Tutorials on machine learning and signal processing methods for anthropogenic and cetacean study using the pacific-sound archives by MBARI
  

Publications

• Animal-borne metrics enable acoustic detection of blue whale migration by Oestreich et al. (2020)
  
• Humpback whale song occurrence reflects ecosystem variability in feeding and migratory habitat of the northeast Pacific by Ryan et al. (2019)
  
• New Passive Acoustic Monitoring in Monterey Bay National Marine Sanctuary by Ryan et al. (2016)
  
• Reduction of Low-Frequency Vessel Noise in Monterey Bay National Marine Sanctuary During the COVID-19 Pandemic by Ryan et al. (2021)
  
• Seal bomb noise as a potential threat to Monterey Bay harbor porpoise by Simonis et al. (2020)
  

Sea Around Us Global Fisheries Catch Data

Tutorials

• Tutorial for analyzing Sea Around Us Global Fisheries Catch Data using Jupyter Notebook by Shelumiel Ortiz
  

Tools & Applications

• Sea Around Us Global Fisheries Catch Data by Sea Around Us, CIC
  
• Sea Around Us Tools & Data by Sea Around Us
  

Publications

• Global Atlas of Marine Fisheries: A critical appraisal of catches and ecosystem impacts. Island Press, Washington D.C. (2016) by Pauly, D.; Zeller, D. (eds)
  
• List of the Sea Around Us publications by Sea Around Us
  

SiPeCaM (Sitios Permanentes de la Calibración y Monitoreo de la Biodiversidad)

Tutorials

• Sample search query on all images files for cumulus 92, using Alfresco. by Carolina Acosta
  Amazon S3
• Sample search query on november audio files for cumulus 92, using Alfresco. by Carolina Acosta
  Amazon S3
• Sample search query on november video files for cumulus 92, using Alfresco. by Carolina Acosta
  Amazon S3

Publications

• Sitios Permanente de la Calibración y Monitoreo de la Biodiversidad by Michael Schmidt et. al.
  

iSDAsoil

Tutorials

• iSDAsoil Python tutorial by Matt Miller
  AWS CloudFormationAmazon SageMaker

Tools & Applications

• iSDAsoil homepage - view soil property maps online by iSDA
  
• iSDAsoil liming demo app on Observable by Jamie Collinson
  

Publications

• African soil properties and nutrients mapped at 30 m spatial resolution using two-scale ensemble machine learning by Tomislav Hengl, Matthew A. E. Miller, Josip Križan, Keith D. Shepherd, Andrew Sila, Milan Kilibarda, Ognjen Antonijević, Luka Glušica, Achim Dobermann, Stephan M. Haefele, Steve P. McGrath, Gifty E. Acquah, Jamie Collinson, Leandro Parente, Mohammadreza Sheykhmousa, Kazuki Saito, Jean-Martial Johnson, Jordan Chamberlin, Francis B. T. Silatsa, Martin Yemefack, John Wendt, Robert A. MacMillan, Ichsani Wheeler & Jonathan Crouch
  

CZ Grand Challenges - Imaging MIT Licensed data and models

Tutorials

• Documentation for CELL-Diff by CZI
  
• Documentation for SubCell by CZI
  
• Quickstart Tutorial for CELL-Diff by CZI
  
• Quickstart Tutorial for SubCell by CZI
  

Publications

• CELL-Diff: Unified diffusion modeling for protein sequences and microscopy images by Zheng Dihan, Bo Huang
  
• SubCell: Vision foundation models for microscopy capture single-cell biology by Ankit Gupta, Zoe Wefers, Konstantin Kahnert, Jan N Hansen, William D. Leineweber, Anthony Cesnik, Dan Lu, Ulrika Axelsson, Frederic Ballllosera Navarro, Theofanis Karaletsos, Emma Lundberg
  

CZ Grand Challenges - Transcriptomic MIT Licensed data and models

Tutorials

• Documentation for scGenePT by CZI
  
• Documentation for Transcriptformer by CZI
  
• Quickstart Tutorial for Transcriptformer by CZI
  
• scGenePT Perturbation Prediction Tutorial by CZI
  

Publications

• A Cross-Species Generative Cell Atlas Across 1.5 Billion Years of Evolution: The TranscriptFormer Single-cell Model by Pearce, J. D., et. al.
  
• scGenePT: Is language all you need for modeling single-cell perturbations? by Ana-Maria Istrate, Donghui Li, Theofanis Karaletsos
  

National Herbarium of NSW

Tutorials

• Accessing the National Herbarium of NSW on AWS by Dr Shelley James
  

Publications

• Atlas of Living Australia by CSIRO
  
• The Australasian Virtual Herbarium by avh@chah.org.au
  

Biodiversity Heritage Library Metadata and Page Images

Tools & Applications

• BHLIndex by Global Names
  
• BioStor by Roderic Page
  

Publications

• AI models are getting better and better at reading handwriting, but how can we find handwritten text to begin with? by Mike Trizna, JJ Dearborn
  
• Understanding BHL Through Metadata: Patterns of Bio-Diverse Knowledge Production by Lidia Ponce de la Vega
  
• Unearthing the Past for a Sustainable Future: Extracting and transforming data in the Biodiversity Heritage Library for climate action by Dearborn J, Lichtenberg M, Richard J, deVeer J, Trizna M, Mika K
  

GEDI L2A Elevation and Height Metrics Data Global Footprint Level V002

Tutorials

• Getting Started with GEDI L2A Version 2 Data in Python by Land Processes Distributed Active Archive Center (LP DAAC)
  
• How to: Find and Access GEDI Data by Land Processes Distributed Active Archive Center (LP DAAC)
  

SeeFar V0

Tutorials

• Getting Started with SeeFar for Multi-Resolution Geospatial Analysis by James Lowman - Coastal Carbon
  Amazon SageMakerAmazon S3

Publications

• SeeFar: Satellite Agnostic Multi-Resolution Dataset for Geospatial Foundation Models by Lowman, J., Zheng, K. L., Fraser, R., The, J. V. G., & Valipour, M.
  

Sounds of Central African landscapes

Publications

• Listen to the rainforest chorus that's helping scientists protect African elephants by Amazon Staff
  
• You can now hear rainforest sounds worldwide-here's why that matters by Rachel Fobar
  

Global Biodiversity Information Facility (GBIF) Species Occurrences

Tutorials

• GBIF and Apache-Spark on AWS tutorial by John Waller
  Amazon EMR

Orcasound - bioacoustic data for marine conservation

Tools & Applications

• Github for our open source projects by Orcasound open source community
  

CZ Grand Challenges - Imaging BSD licensed data and models

Tutorials

• Documentation for Cytoland by CZI
  
• Quickstart Tutorial for Cytoland by CZI
  

Publications

• Cytoland: robust virtual staining of landmark organelles by Liu, Hirata-Miyasaki, et al.
  

MetaGraph Sequence Indexes

Tutorials

• Usage within AWS by Oleksandr Kulkov
  AWS CloudFormationAWS Step FunctionsAWS LambdaAWS BatchAmazon S3Amazon SNS

Tools & Applications

• CloudFormation stack with a Step Function for dataset queries via AWS Batch by Oleksandr Kulkov
  

Publications

• A global metagenomic map of urban microbiomes and antimicrobial resistance by Danko D, Bezdan D, Afshin EE, Ahsanuddin S, Bhattacharya C, Butler DJ, Chng KE, Donnellan D, Hecht J, Jackson K, Kuchin K, Karasikov M, Lyons A, Mak L, Meleshko D, Mustafa H, et al.
  

OpenWings OpenData

Tutorials

• Tutorial I - UCE Phylogenomics by Brant Faircloth
  

Tools & Applications

• phyluce by Brant Faircloth
  

Publications

• Ultraconserved elements anchor thousands of genetic markers for target enrichment spanning multiple evolutionary timescales by BC Faircloth, JE McCormack, NG Crawford, MG Harvey, RT Brumfield, TC Glenn
  

Ocean Biodiversity Information System (OBIS) species occurrence data

Tutorials

• Querying OBIS occurrence data using Amazon Athena by Pieter Provoost
  Amazon Athena

OceanOmics

Tutorials

• Case-studies on using OceanOmics genomes and eDNA data by Philipp Bayer