genetic maps life sciences population genetics recombination maps simulations
Contains all resources (genome specifications, recombination maps, etc.) required for species specific simulation with the stdpopsim package. These resources are originally from a variety of other consortium and published work but are consolidated here for ease of access and use. If you are interested in adding a new species to the stdpopsim resource please raise an issue on the stdpopsim GitHub page to have the necessary files added here.
Data will be added as new species, genome assemblies, and genetic map data for already included species become available.
Please see the individual datasets compiled here for licensing details and make sure to cite the original sources of any elements of this data that you use.
https://stdpopsim.readthedocs.io/en/latest/catalog.html
Andrew Kern & Jerome Kelleher
See all datasets managed by Andrew Kern & Jerome Kelleher.
https://github.com/popsim-consortium/stdpopsim/issues
stdpopsim species resources was accessed on DATE from https://registry.opendata.aws/stdpopsim_kern.
arn:aws:s3:::stdpopsimus-west-2aws s3 ls --no-sign-request s3://stdpopsim/