bioinformatics life sciences metagenomics microbiome
SoilMicrobeDB is a Kraken2 genome database with extensive representation of high-quality genomes of soil organisms, including uncultured and fungal species.
Database is associated with a 2025 publication, and may be expanded with additional genomes in the future.
There are no restrictions on the use of this data.
https://github.com/zoey-rw/SoilMicrobeDB/blob/master/AWS_conda_environment_example/tutorial.md
Zoey Werbin
See all datasets managed by Zoey Werbin.
SoilMicrobeDB genome database on AWS was accessed on DATE from https://registry.opendata.aws/soil_microbe_db. The SoilMicrobeDB includes data from multiple other publications, which we recommend citing. See Table 1 in our open-access manuscript (Werbin et al. 2025) for details.
arn:aws:s3:::kraken2-soil-microbe-databaseus-east-2aws s3 ls --no-sign-request s3://kraken2-soil-microbe-database/