Name: run_dbcan CAZyme and CGC annotation database on AWS
License: There are no restrictions on the use of this data.

Description

Database for use with run_dbcan (CAZyme and CGC annotation), including CAZyme, Transporter, Transcription factor, Signaling Transduction Protein, Sulfatase, Peptidase, and Polysaccharide utilization Loci.

Update Frequency

This database will update annually and usually in July/August.

License

There are no restrictions on the use of this data.

Documentation

https://run-dbcan.readthedocs.io/en/latest/

Managed By

Xinpeng Zhang; Haidong Yi; Yanbin Yin

See all datasets managed by Xinpeng Zhang; Haidong Yi; Yanbin Yin.

Contact

xzhang55@huskers.unl.edu; hyi@stjude.org; yyin@unl.edu

How to Cite

run_dbcan CAZyme and CGC annotation database on AWS was accessed on DATE from https://registry.opendata.aws/run_dbcan.

Usage Examples

Tutorials

run_dbcan Documentation by Xinpeng Zhang; Haidong Yi; Yanbin Yin

Tools & Applications

run_dbcan by Xinpeng Zhang; Haidong Yi; Jinfang Zheng; Le Huang; Qiwei Ge; Yanbin Yin

Publications

dbCAN3: automated carbohydrate-active enzyme and substrate annotation by Jinfang Zheng, Qiwei Ge, Yuchen Yan, Xinpeng Zhang, Le Huang, Yanbin Yin

Resources on AWS

Description

run_dbcan CAZyme and CGC annotation database

Resource type

S3 Bucket

Amazon Resource Name (ARN)

arn:aws:s3:::dbcan

AWS Region

us-west-2

AWS CLI Access (No AWS account required)

aws s3 ls --no-sign-request s3://dbcan/

Explore

Browse Bucket
Description

Notifications for new dbcan data

Resource type

SNS Topic

Amazon Resource Name (ARN)

arn:aws:sns:us-west-2:770494479040:dbcan-object_created

AWS Region

us-west-2