Refgenie reference genome assets

Description

Pre-built refgenie reference genome data assets used for aligning and analyzing DNA sequence data.

Update Frequency

As new data becomes availble (roughly quarterly)

License

Public domain

Documentation

http://refgenie.databio.org

Managed By

Sheffield lab at the University of Virginia

See all datasets managed by Sheffield lab at the University of Virginia.

Contact

https://github.com/databio/refgenie/issues

Usage Examples

Tutorials

• Basic Refgenie tutorial by Nathan Sheffield
  

Tools & Applications

• Pipeline for ATAC-seq data analysis by Jason Smith and Nathan Sheffield
  
• Pipeline for PRO-seq data analysis by Jason Smith and Nathan Sheffield
  

Publications

• Refgenie: a reference genome resource manager by Michał Stolarczyk, Vincent P Reuter, Jason P Smith, Neal E Magee, Nathan C Sheffield