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Pancreatic Cancer Organoid Profiling

cancer genetic genomic STRIDES transcriptomics whole genome sequencing


This study generated a collection of patient-derived pancreatic normal and cancer organoids and it was sequenced using Whole Genome Sequencing (WGS), Whole Exome Sequencing (WXS) and RNA-Seq as well as matched tumor and normal tissue if available. The study provides a valuable resource for pancreatic cancer researchers. The dataset contains open RNA-Seq Gene Expression Quantification data and controlled WGS/WXS/RNA-Seq Aligned Reads, WXS Annotated Somatic Mutation, WXS Raw Somatic Mutation, and RNA-Seq Splice Junction Quantification.

Update Frequency

Genomic Data Commons (GDC) is source of truth for this dataset; GDC offers monthly data releases, although this dataset may not be updated at every release.


NIH Genomic Data Sharing Policy:


Managed By

See all datasets managed by Center for Translational Data Science at The University of Chicago.


How to Cite

Pancreatic Cancer Organoid Profiling was accessed on DATE from

Usage Examples

Tools & Applications

Resources on AWS

  • Description
    RNA-Seq Gene Expression Quantification
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    AWS Region
    AWS CLI Access (No AWS account required)
    aws s3 ls --no-sign-request s3://gdc-organoid-pancreatic-phs001611-2-open/
  • Description
    WGS/WXS/RNA-Seq Aligned Reads, WXS Annotated Somatic Mutation, WXS Raw Somatic Mutation, RNA-Seq Splice Junction Quantification
    Resource type
    S3 Bucket Controlled Access
    Amazon Resource Name (ARN)
    AWS Region

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