Name: Open Targets
License: https://github.com/aws-samples/data-lake-as-code/blob/roda/docs/roda_attributions.txt

Description

This a Parquet representation of the Open Targets Platform's 2020-06 export. The Open Targets Platform integrates evidence from genetics, genomics, transcriptomics, drugs, animal models and scientific literature to score and rank target-disease associations for drug target identification. The Open Targets Platform (https://www.targetvalidation.org) is a freely available resource for the integration of genetics, genomics, and chemical data to aid systematic drug target identification and prioritisation.

Update Frequency

Under 2 months after a new Open Targets release.

License

https://github.com/aws-samples/data-lake-as-code/blob/roda/docs/roda_attributions.txt

Documentation

https://github.com/aws-samples/data-lake-as-code/blob/roda/docs/roda_install.md

Managed By

AWS Biotech Blueprints Team

See all datasets managed by AWS Biotech Blueprints Team.

Contact

https://github.com/aws-samples/data-lake-as-code/issues

Usage Examples

Tutorials

Data Lake as Code Deployment Guide by AWS Biotech Blueprints Team
AthenaGlueLake Formation

Publications

Data Lake as Code, Featuring ChEMBL and Open Targets by Paul Underwood

Resources on AWS

Description

Open Targets 20.06. Information on Open Targets releases can be found here.

Resource type

S3 Bucket

Amazon Resource Name (ARN)

arn:aws:s3:::aws-roda-hcls-datalake/opentargets_20_06/

AWS Region

us-east-1

AWS CLI Access (No AWS account required)

aws s3 ls s3://aws-roda-hcls-datalake/opentargets_20_06// --no-sign-request
Description

Open Targets 19.11

Resource type

S3 Bucket

Amazon Resource Name (ARN)

arn:aws:s3:::aws-roda-hcls-datalake/opentargets_1911/

AWS Region

us-east-1

AWS CLI Access (No AWS account required)

aws s3 ls s3://aws-roda-hcls-datalake/opentargets_1911// --no-sign-request