Open Bioinformatics Reference Data for Galaxy

bioinformatics biology genetic genomic life sciences reference index

Description

This dataset provides genomic reference data and software packages for use with Galaxy and Bioconductor applications. The reference data is available for hundreds of reference genomes and has been formatted for use with a variety of tools. The available configuration files make this data easily incorporable with a local Galaxy server without additional data preparation. Additionally, Bioconductor's AnnotationHub and ExperimentHub data are provided for use via R packages through which the data can be downloaded and installed into any R environment.

Update Frequency

Periodically but not on a set schedule.

License

Public Domain

Documentation

https://github.com/openbiorefdata/documentation/

Managed By

See all datasets managed by Galaxy and Bioconductor Projects.

Contact

outreach@galaxyproject.org or https://support.bioconductor.org/

How to Cite

Open Bioinformatics Reference Data for Galaxy was accessed on DATE from https://registry.opendata.aws/open-bio-ref-data.

Usage Examples

Tutorials
Tools & Applications
Publications

Resources on AWS

  • Description
    The data is organized as versioned objects for reference data, and data packages for use with the R programming language. The reference data is primarily intended for use with the Galaxy application, and has been formatted for easy configuration. In the future, additional formats may be provided. The packages as well as the AnnotationHub and ExperimentHub data are intended for use with R / Bioconductor.
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::biorefdata
    AWS Region
    ap-southeast-2
    AWS CLI Access (No AWS account required)
    aws s3 ls --no-sign-request s3://biorefdata/

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