Medical Segmentation Decathlon

computed tomography health imaging life sciences magnetic resonance imaging medicine nifti segmentation

Description

With recent advances in machine learning, semantic segmentation algorithms are becoming increasingly general purpose and translatable to unseen tasks. Many key algorithmic advances in the field of medical imaging are commonly validated on a small number of tasks, limiting our understanding of the generalisability of the proposed contributions. A model which works out-of-the-box on many tasks, in the spirit of AutoML, would have a tremendous impact on healthcare. The field of medical imaging is also missing a fully open source and comprehensive benchmark for general purpose algorithmic validation and testing covering a large span of challenges, such as: small data, unbalanced labels, large-ranging object scales, multi-class labels, and multimodal imaging, etc. This challenge and dataset aims to provide such resource thorugh the open sourcing of large medical imaging datasets on several highly different tasks, and by standardising the analysis and validation process.

Update Frequency

This is a static dataset; however, tutorials and resources will be updated as they are developed.

License

CC-BY-SA 4.0 International

Documentation

http://medicaldecathlon.com

Managed By

MONAI Development Team

See all datasets managed by MONAI Development Team.

Contact

Medical Decathlon Organisers

Usage Examples

Tutorials
Tools & Applications
Publications

Resources on AWS

  • Description
    Ten tasks from the Medical Segmentation Decathlon Challenge. Tasks are organized by organ system and pathology, as follow, Liver Tumours; Brain Tumours; Hippocampus; Lung Tumours; Prostate; Cardiac; Pancreas Tumour; Colon Cancer; Hepatic Vasculature; Spleen. Tasks are provided in both tar.gz and uncompressed format.
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::msd-for-monai
    AWS Region
    us-west-2
    AWS CLI Access (No AWS account required)
    aws s3 ls s3://msd-for-monai/ --no-sign-request
  • Description
    This is a mirror of s3://msd-for-monai in eu-west-2.
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::msd-for-monai-eu
    AWS Region
    eu-west-2
    AWS CLI Access (No AWS account required)
    aws s3 ls s3://msd-for-monai-eu/ --no-sign-request

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