We performed whole genome sequencing and whole exome sequencing of 31 lung adenocarcinoma (LUAD) samples from the Environment And Genetics in Lung cancer Etiology (EAGLE) study. The EAGLE study is made available on AWS via the NIH STRIDES Initiative (https://aws.amazon.com/blogs/publicsector/aws-and-national-institutes-of-health-collaborate-to-accelerate-discoveries-with-strides-initiative/).
Genomic Data Commons (GDC) is source of truth for this dataset; GDC offers monthly data releases, although this dataset may not be updated at every release.
(NIH Genomic Data Sharing Policy)[https://gdc.cancer.gov/access-data/data-access-policies]
See all datasets managed by Center for Translational Data Science at The University of Chicago.
Integrative Analysis of Lung Adenocarcinoma in Environment and Genetics Lung cancer Etiology (Phase 2) was accessed on
DATE from https://registry.opendata.aws/luad-eagle.
aws s3 ls --no-sign-request s3://gdc-cddp-eagle-1-phs001239-2-open/