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Kraken2 NCBI RefSeq Complete V205 database on AWS

benchmark bioinformatics metagenomics microbiome

Description

Database for use with Kraken2 (taxonomic annotation of metagenomic sequencing reads) including all NCBI RefSeq genomes available in release V205

Update Frequency

This database is currently what was published in our 2023 paper comparing the performance of MetaPhlAn3 and Kraken2, but an updated database may be added in the future.

License

There are no restrictions on the use of this data.

Documentation

https://github.com/R-Wright-1/kraken_metaphlan_comparison/wiki

Managed By

Robyn Wright

See all datasets managed by Robyn Wright.

Contact

robyn.wright@dal.ca

How to Cite

Kraken2 NCBI RefSeq Complete V205 database on AWS was accessed on DATE from https://registry.opendata.aws/kraken2-ncbi-refseq-complete-v205.

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Resources on AWS

  • Description
    Kraken2 NCBI RefSeq Complete V205 database
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::kraken2-ncbi-refseq-complete-v205
    AWS Region
    us-west-2
    AWS CLI Access (No AWS account required)
    aws s3 ls --no-sign-request s3://kraken2-ncbi-refseq-complete-v205/
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