Cloud Indexes for Genomic Analyses

bioinformatics biology genomic mapping medicine reference index whole genome sequencing

Description

Genomic tools use reference databases as indexes to operate quickly and efficiently, analogous to how web search engines use indexes for fast querying. Here, we aggregate genomic, pan-genomic and metagenomic indexes for analysis of sequencing data.

Update Frequency

As new data becomes available; roughly quarterly

License

Public Domain

Documentation

https://benlangmead.github.io/aws-indexes/

Managed By

Langmead Lab at Johns Hopkins University & Kim Lab at University of Texas Southwestern

See all datasets managed by Langmead Lab at Johns Hopkins University & Kim Lab at University of Texas Southwestern.

Contact

https://github.com/BenLangmead/aws-indexes/issues

Usage Examples

Tutorials

Resources on AWS

  • Description
    This bucket contains genomic indexes for Bowtie, Kraken, HISAT, and Centrifuge.
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::genome-idx
    AWS Region
    us-east-1
    AWS CLI Access (No AWS account required)
    aws s3 ls s3://genome-idx/ --no-sign-request

Edit this dataset entry on GitHub

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