Genomic tools use reference databases as indexes to operate quickly and efficiently, analogous to how web search engines use indexes for fast querying. Here, we aggregate genomic, pan-genomic and metagenomic indexes for analysis of sequencing data.
As new data becomes available; roughly quarterly
Langmead Lab at Johns Hopkins University & Kim Lab at University of Texas Southwestern
See all datasets managed by Langmead Lab at Johns Hopkins University & Kim Lab at University of Texas Southwestern.
Cloud Indexes for Bowtie, Kraken, HISAT, and Centrifuge was accessed on
DATE from https://registry.opendata.aws/jhu-indexes.
aws s3 ls --no-sign-request s3://genome-idx/