Interhemispheric Cortex Connectivity Microscopy Dataset

image processing imaging life sciences microscopy Mus musculus neurobiology neuroimaging neuroscience

Description

This dataset contains high-resolution ExA-SPIM (Expansion-Assisted Selective Plane Illumination Microscopy) light-sheet imaging data of interhemispheric cortical connectivity in the mouse brain. Whole-brain volumes are acquired at near-isotropic sub-micron resolution following tissue expansion and clearing, enabling visualization and reconstruction of individual callosal projection neurons and their axonal arbors spanning both hemispheres. Data is stored in OME-Zarr format for efficient cloud-based access and multiscale visualization.

Update Frequency

Periodically as new specimens are imaged

License

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Documentation

https://github.com/florenthaiss/open-data-examples/tree/main/interhemispheric-cortex-connectivity

Managed By

Institut Pasteur

See all datasets managed by Institut Pasteur.

Contact

florent.haiss@pasteur.fr

How to Cite

Interhemispheric Cortex Connectivity Microscopy Dataset was accessed on DATE from https://registry.opendata.aws/interhemispheric-cortex-connectivity. Neural Circuit Dynamics and Decision Making Laboratory, Institut Pasteur - Mouse Neuroanatomy Data.

Usage Examples

Tutorials

Resources on AWS

  • Description
    ExA-SPIM light-sheet microscopy volumes of mouse brains in OME-Zarr format, with sidecar JSON metadata files describing subjects, acquisition parameters, and processing provenance. Organized as a flat list of data assets following AIND-style naming conventions.
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::haisslab
    AWS Region
    eu-west-3
    AWS CLI Access (No AWS account required)
    aws s3 ls --no-sign-request s3://haisslab/
  • Description
    Notifications published whenever new objects are added to the dataset bucket. Subscribe to receive alerts as new specimens are imaged and uploaded.
    Resource type
    SNS Topic
    Amazon Resource Name (ARN)
    arn:aws:sns:eu-west-3:253260001075:haisslab-object_created
    AWS Region
    eu-west-3

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