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ICGC on AWS

bam cancer genetic genomic life sciences vcf

Description

The International Cancer Genome Consortium (ICGC) coordinates projects with the common aim of accelerating research into the causes and control of cancer. The PanCancer Analysis of Whole Genomes (PCAWG) study is an international collaboration to identify common patterns of mutation in whole genomes from ICGC. More than 2,400 consistently analyzed genomes corresponding to over 1,100 unique ICGC donors are now freely available on Amazon S3 to credentialed researchers subject to ICGC data sharing policies.

Update Frequency

New data is added as soon as it is available.

License

Data use is subject to the access and publication polices of the source. Distribution of the data is subject to ICGC Trusted Partner Approval. More information on terms of use is available at https://icgc.org/daco

Documentation

https://dcc.icgc.org/icgc-in-the-cloud/aws

Managed By

International Cancer Genome Collaboratory

See all datasets managed by International Cancer Genome Collaboratory.

Contact

dcc-support@icgc.org

How to Cite

ICGC on AWS was accessed on DATE from https://registry.opendata.aws/icgc.

Usage Examples

Tutorials
Publications

Resources on AWS

  • Description
    BAM and VCF files from the The PanCancer Analysis of Whole Genomes (PCAWG) study.
    Resource type
    S3 Bucket Controlled Access
    Amazon Resource Name (ARN)
    arn:aws:s3:::icgc
    AWS Region
    us-east-1
  • Description
    This public Amazon S3 bucket contains analysis metadata in XML format for genome analysis results. More information at http://oicr.icgc.meta.s3.amazonaws.com/metadata/README
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::oicr.icgc.meta/metadata
    AWS Region
    us-east-1
    AWS CLI Access (No AWS account required)
    aws s3 ls --no-sign-request s3://oicr.icgc.meta/metadata/
  • Description
    Raw sequencing and other primary data from non-TCGA ICGC projects
    Resource type
    S3 Bucket Controlled Access
    Amazon Resource Name (ARN)
    arn:aws:s3:::oicr.icgc
    AWS Region
    us-east-1

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