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Cancer Cell Line Encyclopedia (CCLE)

cancer genetic genomic Homo sapiens life sciences STRIDES transcriptomics whole genome sequencing

Description

The Cancer Cell Line Encyclopedia (CCLE) project is an effort to conduct a detailed genetic characterization of a large panel of human cancer cell lines. The CCLE provides public access to genomic data, visualization and analysis for over 1100 cancer cell lines. This dataset contains RNA-Seq Aligned Reads, WXS Aligned Reads, and WGS Aligned Reads data.

Update Frequency

Genomic Data Commons (GDC) is source of truth for this dataset; GDC offers monthly data releases, although this dataset may not be updated at every release.

License

NIH Genomic Data Sharing Policy: https://gdc.cancer.gov/access-data/data-access-policies

Documentation

https://portals.broadinstitute.org/ccle/about

Managed By

See all datasets managed by Center for Translational Data Science at The University of Chicago.

Contact

dcf-support@datacommons.io

How to Cite

Cancer Cell Line Encyclopedia (CCLE) was accessed on DATE from https://registry.opendata.aws/ccle.

Usage Examples

Tools & Applications
Publications

Resources on AWS

  • Description
    RNA-Seq Alligned Reads, WXS Alligned Reads, WGS Alligned Reads
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::gdc-ccle-2-open
    AWS Region
    us-east-1
    AWS CLI Access (No AWS account required)
    aws s3 ls --no-sign-request s3://gdc-ccle-2-open/

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