BUSCO Datasets

Description

Lineage datasets for use with BUSCO software package. Each dataset contains HMM profiles for clade specific, universal, single-copy marker genes. Datasets are available across archaea, bacteria, eukaryota and virus domains. The repository also includes necessary data files for phylogenetic placement of an input assembly.

Update Frequency

New datasets are released to correspond with updates in OrthoDB versions. Maintenance updates occur a few times a year if necessary to fix any bugs or update metadata.

License

The BUSCO datasets are licensed under the Creative Commons Attribution-NoDerivatives 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nd/4.0/ or send a letter to Creative Commons, PO Box 1866, Mountain View, CA 94042, USA. Any use of these datasets for analyses in a publication or product must include the citation of the corresponding paper - https://doi.org/10.1093/molbev/msab199

Documentation

https://busco.ezlab.org/busco_userguide.html#lineage-datasets

Managed By

Computational Evolutionary Genomics Group, University of Geneva

See all datasets managed by Computational Evolutionary Genomics Group, University of Geneva.

Contact

https://gitlab.com/ezlab/busco/-/issues

How to Cite

BUSCO Datasets was accessed on DATE from https://registry.opendata.aws/busco-data.

Usage Examples

Tutorials

• BUSCO - from QC to gene prediction and phylogenomics by Matthew Berkeley
  

Publications

• BUSCO - assessing genomic data quality and beyond. by Mosè Manni, Matthew R. Berkeley, Mathieu Seppey, Evgeny M. Zdobnov
  
• BUSCO Update - Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes. by Mosè Manni, Matthew R Berkeley, Mathieu Seppey, Felipe A Simão, Evgeny M Zdobnov
  
• OrthoDB and BUSCO update - annotation of orthologs with wider sampling of genomes. by Fredrik Tegenfeldt, Dmitry Kuznetsov, Mosè Manni, Matthew Berkeley, Evgeny M Zdobnov, Evgenia V Kriventseva