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BrainSeq - Neurogenomics to Drive Novel Target Discovery for Neuropsychiatric Disorders

gene expression genotyping life sciences transcriptomics

Description

This ambitious project seeks to characterize the genetic and epigenetic regulation of multiple facets of transcription in distinct brain regions across the human lifespan in samples of major neuropsychiatric disorders and controls. Initially focused on schizophrenia and mood disorders, the goal of this consortium is to elucidate the underlying molecular mechanisms of genetic associations with the goal of identifying novel therapeutic targets. The consortium currently consists of seven pharmaceutical companies and a not-for-profit medical research institution working as a precompetitive team to generate and analyze publicly available archival brain genomic data related to neuropsychiatric illness.

Update Frequency

Never

License

CC BY

Documentation

https://www.synapse.org/#!Synapse:syn12299750/wiki/551288

Managed By

Sage Bionetworks

See all datasets managed by Sage Bionetworks.

Contact

lcolladotor@gmail.com

How to Cite

BrainSeq - Neurogenomics to Drive Novel Target Discovery for Neuropsychiatric Disorders was accessed on DATE from https://registry.opendata.aws/brainseq. Jaffe AE, Straub RE, Shin JH, Tao R, Gao Y, Collado-Torres L, Kam-Thong T, Xi HS, Quan J, Chen Q, Colantuoni C, Ulrich WS, Maher BJ, Deep-Soboslay A; BrainSeq Consortium; Cross AJ, Brandon NJ, Leek JT, Hyde TM, Kleinman JE, Weinberger DR. Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis. Nat Neurosci. 2018 Aug;21(8):1117-1125. doi: 10.1038/s41593-018-0197-y. Epub 2018 Jul 26.

Usage Examples

Tools & Applications
Publications

Resources on AWS

  • Description
    Phase 1: DLPFC polyA+ RNA-seq on 738 subjects spanning the lifespan and three main psychiatric diagnostic groups (Schizophrenia, Major Depression Disorder, and Bipolar Disorder).
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::brainseq.opendata.sagebase.org
    AWS Region
    us-east-1
    AWS CLI Access (No AWS account required)
    aws s3 ls --no-sign-request s3://brainseq.opendata.sagebase.org/

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