Transcriptomic MIT Licensed data and models

biodiversity Biohub biology biomolecular modeling cell biology hdf5 life sciences machine learning model protein transcriptomics

Description

This dataset contains a transcriptomics biological data and models. The models embed transcriptomic data and facilitate transcriptomic analysis. The data is sourced and curated by a team of experts at Biohub and is made available as part of these datasets only when it is not publicly accessible or requires transformations to support model training.

Update Frequency

Update cadence may vary for each resource

License

MIT License

Documentation

https://virtualcellmodels.cziscience.com/models

Managed By

Biohub

See all datasets managed by Biohub.

Contact

data@chanzuckerberg.com

How to Cite

Transcriptomic MIT Licensed data and models was accessed on DATE from https://registry.opendata.aws/biohub-transcriptomics-mit.

Usage Examples

Tutorials
Publications

Resources on AWS

  • Description
    scGenePT model & training data
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::czi-scgenept-public
    AWS Region
    us-west-2
    AWS CLI Access (No AWS account required)
    aws s3 ls --no-sign-request s3://czi-scgenept-public/
  • Description
    TranscriptFormer model
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::czi-transcriptformer
    AWS Region
    us-west-2
    AWS CLI Access (No AWS account required)
    aws s3 ls --no-sign-request s3://czi-transcriptformer/

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