Binding DB

biotech blueprint chemistry genetic genomic life sciences molecule parquet

Description

This a parquet representation of The Binding Database's Full BindingDB Database Dump that you can query straight from Athena in under 60 seconds (no Oracle database required). The Binding Database projects aims to make experimental data on the noncovalent association of molecules in solution searchable via the WWW. The initial focus is on biomolecular systems, but data on host-guest and supramolecular systems are also important and being included over time. It is expected that the enhanced access to data provided by this resource will facilitate drug-discovery, the design of self-assembling systems, and the development of predictive computer models of binding. The Binding Database is based at the Skaggs School of Pharmacy and Pharmaceutical Sciences at the University of California, San Diego, La Jolla, CA.

Update Frequency

Within 2 months after an new BindingDB release.

License

https://github.com/aws-samples/data-lake-as-code/blob/roda/docs/roda_attributions.txt

Documentation

https://github.com/aws-samples/data-lake-as-code/blob/roda/docs/roda_install.md

Managed By

See all datasets managed by Amazon Web Services.

Contact

https://github.com/aws-samples/data-lake-as-code/issues

Usage Examples

Tutorials
Publications

Resources on AWS

  • Description
    Binding DB 2020-11-14. Information on BindingDB releases can be found here.
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::aws-roda-hcls-datalake/binding_db/
    AWS Region
    us-east-1
    AWS CLI Access (No AWS account required)
    aws s3 ls s3://aws-roda-hcls-datalake/binding_db/ --no-sign-request

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