Allen Mouse Brain Atlas

biology gene expression genetic image processing imaging life sciences machine learning Mus musculus neurobiology transcriptomics

Description

The Allen Mouse Brain Atlas is a genome-scale collection of cellular resolution gene expression profiles using in situ hybridization (ISH). Highly methodical data production methods and comprehensive anatomical coverage via dense, uniformly spaced sampling facilitate data consistency and comparability across >20,000 genes. The use of an inbred mouse strain with minimal animal-to-animal variance allows one to treat the brain essentially as a complex but highly reproducible three-dimensional tissue array. The entire Allen Mouse Brain Atlas dataset and associated tools are available through an unrestricted web-based viewing application (http://mouse.brain-map.org). The collection of > 650,000 images have been made available in this Open Data bucket to enable efficient access and analysis of the this dataset.

Update Frequency

Never

License

http://www.alleninstitute.org/legal/terms-use/

Documentation

http://help.brain-map.org/display/mousebrain/Documentation

Managed By

Allen Institute

See all datasets managed by Allen Institute.

Contact

awspds@alleninstitute.org

Usage Examples

Tutorials
Tools & Applications
Publications

Resources on AWS

  • Description
    Project data files in a public bucket
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::allen-mouse-brain-atlas
    AWS Region
    us-west-2
    AWS CLI Access (No AWS account required)
    aws s3 ls s3://allen-mouse-brain-atlas/ --no-sign-request

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