The Registry of Open Data on AWS is now available on AWS Data Exchange
All datasets on the Registry of Open Data are now discoverable on AWS Data Exchange alongside 3,000+ existing data products from category-leading data providers across industries. Explore the catalog to find open, free, and commercial data sets. Learn more about AWS Data Exchange

Allen Cell Imaging Collections

biology cell biology cell imaging Homo sapiens image processing life sciences machine learning microscopy


This bucket contains multiple datasets (as Quilt packages) created by the Allen Institute for Cell Science. The types of data included in this bucket are listed below:

  1. Field of view or cropped images of cells
  2. Segmentations of structures in the images (e.g., boundaries of cells, DNA, other intracellular structures, etc.)
  3. Processed versions of the above images and segmentations
  4. Machine learning predictions and labels of the data listed above
  5. Models trained on the previously listed data
  6. Additional supporting non-image data related to the above listed data types (e.g., gene expression data, whole genome sequencing data, features derived from the images or model predictions, metadata)
External funding:The generation of some datasets was supported by the National Human Genome Research Institute of the National Institutes under Award Number UM1HG011593. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.

Update Frequency




Managed By

See all datasets managed by Allen Institute for Cell Science.


How to Cite

Allen Cell Imaging Collections was accessed on DATE from

Usage Examples

Tools & Applications

Resources on AWS

  • Description
    Data files in a public bucket
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    AWS Region
    AWS CLI Access (No AWS account required)
    aws s3 ls --no-sign-request s3://allencell/

Edit this dataset entry on GitHub

Tell us about your project