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Allen Cell Imaging Collections

biology cell biology cell imaging Homo sapiens image processing life sciences machine learning microscopy


This bucket contains multiple datasets (as Quilt packages) created by the Allen Institute for Cell Science (AICS). The imaging data in this bucket contains either of the following:

  1. field of view images from glass plates
  2. cell membrane, DNA, and structure segmentations
  3. cell membrane, DNA and structure contours
  4. machine learning imaging predictions of the previously listed modalities.
In addition, many of the datasets include CSVs that contain feature sets related to that data.

Update Frequency




Managed By

See all datasets managed by Allen Institute for Cell Science.


How to Cite

Allen Cell Imaging Collections was accessed on DATE from

Usage Examples

Tools & Applications

Resources on AWS

  • Description
    Data files in a public bucket
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    AWS Region
    AWS CLI Access (No AWS account required)
    aws s3 ls --no-sign-request s3://allencell/

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