Description
This bucket contains multiple datasets (as Quilt packages) created by the
Allen Institute for Cell Science (AICS). The imaging data in this bucket contains
either of the following:
- field of view images from glass plates
- cell membrane, DNA, and structure segmentations
- cell membrane, DNA and structure contours
- machine learning imaging predictions of the previously listed modalities.
In addition, many of the datasets include CSVs that contain feature sets
related to that data.
Update Frequency
Biweekly
License
https://www.allencell.org/terms-of-use.html
Documentation
https://open.quiltdata.com/b/allencell
Managed By

See all datasets managed by Allen Institute for Cell Science.
Contact
cells@alleninstitute.org
How to Cite
Allen Cell Imaging Collections was accessed on DATE
from https://registry.opendata.aws/allen-cell-imaging-collections.
Usage Examples
Tutorials
Tools & Applications
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AICS Volume Viewer by Dan Toloudis
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AICSImageIO by Matthew Bowden, Jackson Brown, Jamie Sherman, Dan Toloudis
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Allen Cell Feature Explorer by Allen Institute for Cell Science
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Allen Cell Structure Segmenter by Jianxu Chen, Liya Ding, Matheus P. Viana, Melissa C. Hendershott, Ruian Yang, Irina A. Mueller, Susanne M. Rafelski
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Integrated Mitotic Stem Cell by Allen Institute for Cell Science
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Pytorch 3D Integrated Cell by Gregory R. Johnson, Rory M. Donovan-Maiye, Mary M. Maleckar
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Visual Guide to Human Cells by Allen Institute for Cell Science
Publications
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Label-free prediction of three-dimensional fluorescence images from transmitted-light microscopy by Chawin Ounkomol, Sharmishtaa Seshamani, Mary M. Maleckar, Forrest Collman & Gregory R. Johnson
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Robust integrated intracellular organization of the human iPS cell: where, how much, and how variable? by Matheus P. Viana, Jianxu Chen*, Theo A. Knijnenburg*, Ritvik Vasan*, Calysta Yan*... Allen Institute for Cell Science... Graham T. Johnson, Ruwanthi N. Gunawardane, Nathalie Gaudreault, Julie A. Theriot, Susanne M. Rafelski