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Open Targets - Data Lakehouse Ready

biotech blueprint chemistry genetic genomic life sciences molecule parquet

Deprecated

Amazon is no longer hosting this Data Lakehouse Ready dataset


Description

This a Parquet representation of the Open Targets Platform's latest export. The Open Targets Platform integrates evidence from genetics, genomics, transcriptomics, drugs, animal models and scientific literature to score and rank target-disease associations for drug target identification. The Open Targets Platform (https://www.targetvalidation.org) is a freely available resource for the integration of genetics, genomics, and chemical data to aid systematic drug target identification and prioritisation. This dataset is 'Lakehouse Ready'. Meaning, you can query this data in-place straight out of the Registry of Open Data S3 bucket. Deploy this dataset's corresponding CloudFormation template to create the AWS Glue catalog entries into your account in about 30 seconds. That one step will enable you to write SQL with AWS Athena, build dashboards and charts with Amazon Quicksight, perform HPC with AWS EMR, or join into your AWS Redshift clusters. More detail in (the documentation)[https://github.com/aws-samples/data-lake-as-code/blob/roda/README.md.

Update Frequency

Within two weeks of new Open Targets releases

License

https://github.com/aws-samples/data-lake-as-code/blob/roda/docs/roda_attributions.txt

Documentation

https://github.com/aws-samples/data-lake-as-code/blob/roda/docs/roda_install.md

Managed By

See all datasets managed by Amazon Web Services.

Contact

https://github.com/aws-samples/data-lake-as-code/issues

How to Cite

Open Targets - Data Lakehouse Ready was accessed on DATE from https://registry.opendata.aws/opentargets.

Usage Examples

Tutorials
Publications

Resources on AWS

  • Description
    Latest Open Targets release. Updates within two weeks of new Open Targets version. Information on Open Targets releases can be found here.
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::aws-roda-hcls-datalake/opentargets_latest/
    AWS Region
    us-east-1
    AWS CLI Access (No AWS account required)
    aws s3 ls --no-sign-request s3://aws-roda-hcls-datalake/opentargets_latest/
  • Description
    Open Targets v20.06. Does not update.
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::aws-roda-hcls-datalake/opentargets_20_06/
    AWS Region
    us-east-1
    AWS CLI Access (No AWS account required)
    aws s3 ls --no-sign-request s3://aws-roda-hcls-datalake/opentargets_20_06/
  • Description
    Open Targets v19.11. Does not update
    Resource type
    S3 Bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::aws-roda-hcls-datalake/opentargets_1911/
    AWS Region
    us-east-1
    AWS CLI Access (No AWS account required)
    aws s3 ls --no-sign-request s3://aws-roda-hcls-datalake/opentargets_1911/

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